
Scholarly Publications Facilitated by OU Research IT
NOTE:
This list is always incomplete and out of date.
Click
here
for instructions on
how to acknowledge use of OU Research IT resources
and/or personnel
in publications.
Ongoing
High Energy Physics ATLAS Project:
OU Research IT (especially OSCER) systems have been used for
reprocessing data from various experiments.
All papers on these topics at
this link
that used collision data
used OU Research IT (especially OSCER)
for part of their computing.
High Energy Physics D0 Project:
OU Research IT (especially OSCER) systems have been used for
reprocessing data from Run IIa,
primary processing of data from Run IIa
and
reprocessing of data from Run IIb.
All papers on these topics at
this link
used OU Research IT (especially OSCER)
for part of their computing.
2014
2014 Publications Facilitated by OSCER Rounds/Help Sessions
Coming soon
Other 2014 Publications Facilitated by OU Research IT

J. Acre, B. E. Eskridge, N. Zoller and I. Schlupp,
2014:
"Adapting to a Changing Environment
Using Winner and Loser Effects."
Proc. GECCO Comp '14,
the 2014 Conference Companion on
Genetic and Evolutionary Computation,
137144.
DOI:10.1145/2576768.2598355.

J. Acre, B. E. Eskridge and N. Zoller,
2014:
"Effects of Personality Decay on Collective Movements."
Proc. GECCO Comp '14,
the 2014 Conference Companion on
Genetic and Evolutionary Computation,
10251028.
DOI:10.1145/2598394.2605678.

E. J. Alred, E. G. Scheele, W. M. Berhanu and
U. H. E. Hansmann,
2014:
"Stability of Iowa Mutant and Wild Type
Aβpeptide Aggregates."
Submitted.

E. Baron,
2014:
"SNe Ia: Can Chandrasekhar mass explosions
reproduce the observed zoo?"
Nuclear Physics A,
928,
319330.

M. D. Benge, R. C. Huck and H. H. Sigmarsson,
2014:
"XBand Performance of ThreeDimensional, Selectively
Laser Sintered Waveguides."
Antennas and Propagation Society
International Symposium (APSURSI),
2014 IEEE,
12.

W. M. Berhanu and U. H. E. Hansmann,
2014:
"Interspecies crossseeding: stability and assembly of
rat  human amylin aggregates."
PlosONE,
9,
e97051.

W. M. Berhanu and U. H. E. Hansmann,
2014:
"Stability of Amyloid Oligomers."
Advances in Protein Chemistry and Structural Biology.
113141,
Available online Sep 4 2014,
in press,
corrected proof.
DOI:10.1016/bs.apcsb.2014.06.006.

D. Booth, S. Rittenhouse, J. Yang,
H. Sadeghpour and J. P. Shaffer,
2014:
"Production of trilobite Rydberg molecule dimers
with thousandDebye permanent electric dipole moments."
Science,
submitted.

K. Calhoun, T. M. Smith, D. M. Kingfield,
J. Gao and D. J. Stensrud,
2014:
"Forecaster Use and Evaluation of realtime
3DVAR analyses during Severe Thunderstorm
and Tornado Warning Operations in the
Hazardous Weather Testbed."
Wea. Forecasting,
29,
601613.
DOI:10.1175/WAFD1300107.1.

S. P. Calhoun, D. Akin, J. Alexander, B. Zimmerman,
B. George and H. Neeman,
2014:
"The Oklahoma PetaStore:
A Business Model for
Big Data on a Small Budget."
Proc. XSEDE'14,
paper 73.

L. Carlaw,
2014:
"Evaluating the impacts of assimilating surface
observations on highresolution analyses and forecasts."
M.S. thesis,
School of Meteorology
(advisors F. Carr, J. Brotzge),
University of Oklahoma.

J. C. DeForest, L. Du and P. M. Joyner,
2014:
"4',4‴,7,7″tetraOmethylcupressuflavone inhibits
seed germination of Lactuca sativa."
J Nat Prod.,
77
(4),
10936.
DOI:10.1021/np4010739.
Epub 2014 Mar 14.

L. Ding, G. F. Shou, H. Yuan, D. Urbano and Y. H. Cha,
2014:
"Lasting Modulation Effects of rTMS on
Neural Activity and Connectivity as Revealed
by Resting State EEG."
IEEE Transactions on Biomedical Engineering,
in press.

L. Du, A. J. Robles, J. B. King, S. L. Mooberry
and R. H. Cichewicz,
2014:
"Cytotoxic dimeric epipolythiodiketopiperazines from
the ascomycetous fungus Preussia typharum."
J Nat Prod.,
77
(6),
145966.
DOI:10.1021/np5002253.
Epub 2014 Jun 3.

A. O. Fierro,
2014:
"Relationships between California rainfall variability
and largescale climate drivers."
International Journal of Climatology,
DOI: 10.1002/joc.4112.

A. O. Fierro, A. J. Clark, E. R. Mansell, D. R. MacGorman,
S. Dembek and C. Ziegler,
2014:
"Impact of stormscale lightning data assimilation on
WRFARW precipitation forecasts during
the 2013 warm season over the contiguous United States."
Monthly Weather Review,
conditionally accepted pending major revisions.

A. O. Fierro, J. Gao, C. Ziegler, E. R. Mansell,
D. R. MacGorman and S. Dembek,
2014:
"Evaluation of a cloud scale lightning data assimilation
technique and a 3DVAR method for the analysis and
short term forecast of the 29 June 2012 derecho event."
Monthly Weather Review,
142,
183202.

A. O. Fierro and L. M. Leslie,
2014:
"Relationships between southeast
Australian temperature anomalies and
largescale climate drivers."
Journal of Climate,
27,
13951412.

A. O. Fierro, E. R. Mansell, C. Ziegler and D. R. MacGorman,
2014:
"Explicit electrification and lightning forecast
implemented within the WRFARW model."
Preprint,
15th International Conference on Atmospheric
Electricity,
Norman OK USA,
June 1520.
Commission of the International Association of
Meteorology and Atmospheric Physics.

A. O. Fierro, E. R. Mansell, C. Ziegler, D. R. MacGorman,
S. Dembek and A. J. Clark,
2014:
"A cloudscale lightning data assimilation technique
implemented within the WRFARW model."
Preprint,
15th International Conference on Atmospheric
Electricity,
Norman OK USA,
June 1520.
Commission of the International Association of
Meteorology and Atmospheric Physics.

B. Friesen, E. Baron, J. P. Wisniewski, J. T. Parrent,
R. C. Thomas, T. R. Miller and G. H. Marion,
2014:
"Nearinfrared Line Identification in Type Ia Supernovae
During the Transitional Phase."
The Astrophysical Journal,
792,
120.

J. Gao and D. J. Stensrud,
2014:
"Some Observing System Simulation Experiments
with a Hybrid 3DEnVAR System for Stormscale
Radar Data Assimilation."
Mon. Wea. Rev.,
142,
33263346.
DOI:10.1175/MWRD1400025.1.

H. W. German, S. Uyaver and U. H. E. Hansmann,
2014:
"SelfAssembly of PhenylalanineBased Molecules."
Submitted.

F. Gong, D. V. Papavassiliou and H. Duong,
2014:
"Offlattice MonteCarlo simulation of heat
transfer through Carbon nanotube multiphase
systems taking into account thermal boundary resistance."
Numerical Heat Transfer, Part A: Applications,
65
(11),
10231043.
DOI:10.1080/10407782.2013.850972.

R. E. Gordnier and P. J. Attar,
2014:
"Impact of flexibility on the aerodynamics of
an aspect ratio two membrane wing."
Journal of Fluids and Structures,
45,
138152.

L. Grasso, D. Bikos, D. Lindsey, K.S. Lim,
A. Clark and S. Dembek,
2014:
"Evaluation of and Suggested Improvements to
the WSM6 Microphysics in WRFARW
Using Synthetic and Observed GOES13 Imagery.."
Monthly Weather Review,
22
(10),
36353650.

D. Grimmer, A. SafaviNaini, B. CapogrossoSansone
and Ş. G. Söyler,
2014:
"Quantum Phases of SoftCore Dipolar Bosons in
Optical Lattices."
Phys. Rev. A,
accepted.
Arxiv:1408.3532.

S. Guo, B. Zhang, S. Verma and K. J. Marfurt,
2014:
"Vector correlation of AVAz and curvature
attributeApplication to Mississippian
Tripolitic Chert, Osage County, Northeast Oklahoma."
SEG Technical Program Expanded Abstracts 2014,
346350.

P. H. Hauschildt and E. Baron,
2014.
"A 3D radiative transfer framework. XI. Multilevel NLTE."
Astronomy and Astrophysics,
566,
A89.

M. D. P. Hemantha, Y. Wang and C.H. Chuang,
2014:
"Measurement of H(z) and D_A(z) from the
twodimensional power spectrum of Sloan
Digital Sky Survey luminous red galaxies."
Monthly Notices of the Royal Astronomical Society,
submitted.

T. A. Ho and A. Striolo,
2014:
"Molecular Dynamics Simulation of the
GrapheneWater Interface: Comparing Water Models."
Mol. Simul.,
in press.

A. Johnson, X. Wang, M. Xue, F. Kong, K. Thomas,
Y. Wang, K. Brewster and J. Gao,
2014:
"Multiscale characteristics and evolution of
perturbations for warm season convection
allowing precipitation forecasts:
Dependence on background flow and
method of perturbation.
Mon. Wea. Rev.,
142
(3),
10531073.
DOI:10.1175/MWRD1300204.1.

Y. L. Kogan,
2014:
"Parameterization of microphysics in
cumulus convective clouds."
14th Conference on Cloud Physics,
July 711 2014, Boston MA USA.

Y. L. Kogan and D. B. Mechem,
2014:
"A PDF based microphysics parameterization for
shallow cumulus cloud."
J. Atmos. Sci.,
71,
10701089.

A. LaBryer, P. J. Attar, P. Vedula,
2014:
"Optimal spatiotemporal reduced order modeling of
the viscous Burgers equation."
Finite Elements in Analysis and Design,
79,
4052.

T. Le, D. R. Cole and A. Striolo,
2014:
"Propane Simulated in Silica Pores:
Adsorption Isotherms, Molecular Structure,
and Mobility.
Chem. Eng. Sci.,
in press.

L. Li and L. Gruenwald,
2014:
"SMOPDC: An Autonomous Vertical Partitioning
Technique for Distributed Databases on Cluster Computers."
IEEE International Conference on Information
Integration and Reuse
(IRI),
San Francisco CA.

K. Liao, R. R. Xiao, J. M. Gonzalez and L. Ding,
2014:
"Decoding individual finger movements of one hand
using human EEG signals."
PLoS ONE,
9
(1),
e85192.
DOI:10.1371/journal.pone.0085192.

Z. Liu, J.G. Yu, E. A. O'Rear and A. Striolo,
2014:
"Aqueous DualTailed Surfactants Simulated on
the Alumina Surface."
J. Phys. Chem. B,
in press.

C. X. Luu, J. Yu and A. Striolo,
2014:
"Understanding Pickering Emulsions Using
MultiScale Simulations."
UK Colloids 2014,
London UK.

R. A. McPherson, C. F. Gaitán Ospina, K. W. Dixon
and B. Moore III,
2014:
"Statistical downscaling."
39th Annual Meeting of the
American Association of State Climatologists,
Stevenson WA.

M. Morris and K. Frinkle,
2014:
"A ThreeSemester, Interdisciplinary Approach to
Parallel Programming in a Liberal Arts University Setting."
Proc. XSEDE'14,
paper 66.
DOI:10.1145/2616498.2616567.

E. D. Mullens,
2014:
"Moisture
and Thermal Characteristics of
Southern Plains Ice Storms: Insights from
a regional climatology and highresolution
WRFARW sensitivity study."
Ph.D. dissertation
(advisor L. Leslie),
School of Meteorology,
University of Oklahoma.

H. Neeman, D. Akin, J. Alexander, D. Brunson,
S. P. Calhoun, J. Deaton, F. Fondjo Fotou, B. George,
D. Gentis, Z. Gray, E. Huebsch, G. Louthan, M. Runion,
J. Snow and B. Zimmerman,
2014:
"The OneOklahoma Friction Free Network:
Towards a MultiInstitutional Science DMZ
in an EPSCoR State."
Proc. XSEDE'14,
paper 72.

K. L. Nemunaitis,
2014:
"Observational and model analyses of the
Oklahoma City urban heat island."
Ph.D. dissertation (advisor P. Klein),
School of Meteorology,
University of Oklahoma.

O. Ozcelik and P. J. Attar,
2014:
"Effect of nonlinear damping on
the structural dynamics of flapping beams."
International Journal of NonLinear Mechanics,
65,
148163.

N. H. Pham and D. V. Papavassiliou,
2014:
"Flow recovery downstream from nanoposts
grown at the wall of a microchannel."
Nanoscale and Microscale Thermophysical Engineering,
18
(1),
117.

N. H. Pham, D. P. Swatske, J. H. Harwell,
B. J. Shiau and D. V. Papavassiliou,
2014:
"Transport of nanoparticles and kinetics in
packed beds: A numerical approach with
lattice Boltzmann simulations and particle
tracking."
International Journal of Heat and
Mass Transfer,
72,
319328.

N. Pham, R. S. Voronov, N. R. Tummala
and D.V. Papavassiliou,
2014:
"Bulk stress distributions in the pore space
of spherepacked beds under Darcy flow conditions."
Phys. Rev. E,
89
(3),
article 033016.
DOI:10.1103/PhysRevE.89.033016.
(Highlighted in PRE Kaleidoscope.)

A. Phan, D. R. Cole and A. Striolo,
2014:
"Aqueous Methane in SlitShaped Silica Nanopores:
High Solubility and Traces of Hydrates."
J. Phys. Chem. C,
118
48604868.

A. Phan, D. R. Cole and A. Striolo,
2014:
"Preferential Adsorption from Liquid WaterEthanol
Mixtures in Alumina Pores."
Langmuir,
30,
80668077.

A. Phan, T. A. Ho and A. Striolo,
2014:
"Aqueous Systems Under Confinement: From
Preferential Adsorption and Exotic Structures to
Their Relevance in the Energy Landscape."
ChemEngDayUK 2014 Conference,
Manchester UK.

A. Phan and A. Striolo,
2014:
"Aqueous Methane in SlitShaped Silica Nanopores:
High Solubility and Traces of Hydrates."
ChemEngDayUK 2014 Conference,
Manchester UK.

L. Qiao, Y. Hong, R. McPherson, M. Shafer,
S. Chen, D. Williams, D. Gade and D. Lilly,
2014:
"Climate change and hydrological response in
the transstate Oologah Lake watershed —
Evaluating dynamically downscaled NARCCAP and
statistically downscaled CMIP3 simulations
with VIC model."
Water Resour. Manag.,
in press.

J. D. Ross, E. S. Bridge, M. J. Rozmarynowycz
and V. P. Bingman,
2014:
"Individual variation and evolutionary holdovers
in the migratory behavior of a sitefaithful,
peripheral bird population."
Animal Migration,
2,
2933.

S. Saeedi, W. S. Wilson, T. R. Ashley, J. Lee and
H. H. Sigmarsson,
2014:
"CapacitiveBased, ClosedLoop Frequency Control of
SubstrateIntegrated Cavity Tunable Filters."
Proceedings of International Symposium on
Microelectronics, International Microelectronics and
Packaging Society (IMAPS).

S. Saeedi, J. Lee and H. H. Sigmarsson,
2014:
"Broadband Implementation of Tunable, Substrate Integrated,
EvanescentMode, Cavity Bandpass Filters."
Microwave Conference, 2014 European,
accepted.

A. SafaviNaini, B. CapogrossoSansone and A. Kuklov,
2014:
"Quantum phases of hardcore dipolar bosons
in coupled 1D optical lattices."
Phys. Rev. A,
accepted.
Arxiv:1405.4328v1.

Z. T. Segele, M. B. Richman, M. L. M. Leslie
and P. J. Lamb,
2014:
"SeasonaltoInterannual Variability of
Ethiopia/Horn of Africa Monsoon. Part II:
Statistical MultiModel Ensemble Rainfall Predictions."
J. Climate.,
submitted.

G. F. Shou and L. Ding,
2014:
"Detection of EEG SpatialSpectralTemporal
Signatures of Errors: A Comprehensive Comparison of
ICAbased and Channelbased Methods."
Brain Topography,
in press.

G. F. Shou and L. Ding,
2014:
"Neural Markers for Immediate Performance Accuracy
in a Stroop ColorWord Matching Task:
An EventRelated Potentials Analysis."
Proc. of Annual Int. Conf. of IEEEEMBS,
accepted.

G. F. Shou, D. Dasari and L. Ding,
2014:
"Ongoing alpha activity and poststimulus
potentials jointly predict errors."
NeuroImage,
under revision.

G. F. Shou, H. Yuan, D. Urbano, Y. H. Cha and L. Ding,
2014:
"Changes of Symptom and EEG in
Mal De Debarquement Syndrome Patients
after Repetitive Transcranial Magnetic Stimulation
Over Bilateral Prefrontal Cortex: A Pilot Study.
Proc. of Annual Int. Conf. of IEEEEMBS,
accepted.

J. W. Stone, S. Bleckley, S. Lavelle and S. J. Schroeder,
2014:
"A Parallel Implementation of the Wuchty Algorithm with
Additional Experimental Filters to More Thoroughly
Explore RNA Conformational Space."
Submitted.

A. Striolo,
2014:
"Aqueous Systems Under Confinement:
Preferential Adsorption and Exotic Structures."
9th Liblice Conference on the
Statistical Mechanics of Liquids,
Sec, Czech Republic.

A. Striolo,
2014:
"Understanding Interfacial Water and Its Role on
Various Practical Applications Using Molecular
Simulations."
MRS Bulletin,
in press.
Invited article.

A. Striolo,
2014:
"Understanding Pickering Emulsions Using
MultiScale Simulations."
ACS 2014 Colloid & Surface Science Symposium,
University of Pennsylvania, Philadelphia PA.

A. Striolo,
2014:
"Understanding Pickering Emulsions Using
MultiScale Simulations."
9th Liblice Conference on the
Statistical Mechanics of Liquids,
Sec, Czech Republic.

M. Suttipong, B. P. Grady and A. Striolo,
2014:
"SelfAssembled Surfactants on Patterned Surfaces:
Confinement and Cooperative Effects on Aggregates
Morphology.
Phys. Chem. Chem. Phys.,
16,
1638816398.
Also featured the cover art of
Phys. Chem. Chem. Phys.,
16
(31),
August 2 2014.

M. Suttipong, B. P. Grady and A. Striolo,
2014:
"SelfAssembly of Aqueous Surfactants on
Patterned Surfaces: Insights from
CoarseGrained Simulations."
UK Colloids 2014,
London UK.

M. Suttipong, C. X. Luu and A. Striolo,
2014:
"Understanding Pickering Emulsions using
MultiScale Simulations."
ChemEngDayUK 2014 Conference,
Manchester UK.

A. Urvoy, F. Ripka, I. Lesanovsky, D. Booth,
J. P. Shaffer, T. Pfau and R. Löw,
2014:
"Strongly correlated growth of
Rydberg aggregates in a vapour cell."
Phys. Rev. Lett.,
submitted.
ArXiv:1408.0039

S. Uyaver and U. H. E. Hansmann,
2014:
"Multicanonical Monte Carlo Simulations of a
de novo designed protein with endtoend βsheet."
J. Chem. Phys.,
140,
065101.

S. Verma, S. Guo and K. J. Marfurt,
2014:
"Prestack suppression of high frequency ground
roll using a 3D multiwindow KL filter:
Application to a legacy Mississippi Lime survey."
SEG Technical Program Expanded Abstracts 2014,
42744278.

Y. Wang,
2014:
"ModelIndependent Measurements of Cosmic
Expansion and Growth at z=0.57 Using the
Anisotropic Clustering of CMASS Galaxies
From the Sloan Digital Sky Survey Data Release 9"
Monthly Notices of the Royal Astronomical Society,
443,
2950.

R. B. Williams, L. Du, V. L. Norman, M. G. Goering,
M. O'NeilJohnson, S. Woodbury, M. A. Albrecht,
D. R. Powell, R. H. Cichewicz, G. R. Eldridge
and C. M. Starks,
2014:
"Diterpenes from the endangered
goldenrod Solidago shortii."
J Nat Prod.,
77
(6),
143844.
DOI:10.1021/np500178s.
Epub 2014 Jun 12.

T. Wu, M. A. Armand and J. R. Cruz,
2014:
"DetectionDecoding on BPMR Channels with
Writtenin Error Correction and ITI Mitigation."
IEEE Transactions on Magnetics,
50,
(1),
3000211.
DOI: 10.1109/TMAG.2013.2281779.

R. Xiao and L. Ding,
2014:
"Classification of Finger Pairs from One
Hand Based on Spectral Features in Human EEG."
Proc. of Annual Int. Conf. of IEEEEMBS,
accepted.

F. Yasar, P. Jiang and U. H. E. Hansmann,
2014:
"Multicanonical Molecular Dynamics Simulations of
the Nterminal Domain of Protein L9."
Euro. Phys. Lett.,
105,
30008.

F. Yasar, A. K. Sieradzan and U. H. E. Hansmann,
2014:
"Folding and SelfAssembly of a Small Heterotetramer."
J. Chem. Phys.,
140,
105103.

M. Yuan, A. Nara and J. Bothwell,
2014:
"Spacetime representation and analytics."
Annals of GIS,
20
(1),
19.

B. Zhang, S. Guo, F. Li, P. Li and K. J. Marfurt,
2014:
"Brittleness evaluation of resource plays by
integrating petrophysics and seismic analysis."
SEG Technical Program Expanded Abstracts 2014,
26672671.

B. Zhang, T. Zhao, J. Qi and K. J. Marfurt,
2014:
"Strategies to preserve the data fidelity at
far offset."
SEG Technical Program Expanded Abstracts 2014,
46914696.

J. Zhang, S. You and L. Gruenwald,
2014:
"Parallel Online Spatial and Temporal Aggregations
on Multicore CPUs and ManyCore GPUs."
Information Systems
(Elsevier journal),
44,
134154.

J. Zhang, S. You and L. Gruenwald,
2014:
"Data Parallel Quadtree Indexing and Spatial
Query Processing of Complex Polygon Data on GPUs."
5th International Workshop on Accelerating
Data Management Systems Using Modern Processors
and Storage Architectures,
Hangzhou China.

J. Zhang, S. You and L. Gruenwald,
2014:
"HighPerformance Spatial Query Processing on
Big Taxi Trip Data using GPGPUs."
Proc. 3rd IEEE International Congress on BigData,
Anchorage AK.

K. Zhao and L. E. Bartley,
2014:
"Comparative
Genomic Analysis of the R2R3 MYB Secondary
Cell Wall Regulators in Arabidopsis, poplar,
rice, maize, and switchgrass."
BMC Plant Biology,
14,
135.

M. Zhu, W. B. Zhang, D. Dickens and L. Ding:
2014:
"Reconstructing Spatially Extended Brain Sources
via Enforcing Multiple Transform Sparseness."
NeuroImage,
86,
280293.
DOI:10.1016/j.neuroimage.2013.09.070.
2013
2013 Publications Facilitated by OSCER Rounds/Help Sessions
Coming soon
Other 2013 Publications Facilitated by OU Research IT

M. I. AbdelFattah and R. M. Slatt,
2013:
"Sequence Stratigraphic Controls on Reservoir
Characterization and Architecture:
Case study of the Messinian Abu Madi
IncisedValley, Baltim Fields, Egypt."
J. Cent. Europe J. Geosciences.

D. Argyris, A. Phan, P. D. Ashby and A. Striolo,
2013:
"Hydration Structure at the
αAI_{2}O_{3} (0001) Surface:
Insights from Experimental AFM Force Spectroscopy
Data and Atomistic Molecular Simulations."
J. Phys. Chem. C,
117,
1043310444.

J. Biener, M. A. Worsley, B. C. Wood, T. Ogitsu,
M. BaggeHansen, J. R. I. Lee, M. Stadermann,
M. M. Biener, S. Dasgupta, L. Shao, R. K. Kalluri,
A. V. Hamza, A. Striolo, J. Weissmueller, H. Hahn
and T. F. Baumann,
2013:
"Interfacial Charge Induced Phenomena in Porous
Graphenebased Bulk Materials."
224th ECS Meeting,
San Francisco CA.

W. M. Berhanu, F. Yasar and U. H. E. Hansmann,
2013:
"In Silico cross seeding of Aβ and
amylin fibrillike oligomers."
ACS Chem. Neurosci.,
4,
1488.

W. M. Berhanu and U. H. E. Hansmann,
2013:
"The stability of cylindrin βbarrel
amyloid oligomer models —
a molecular dynamics study."
Proteins,
81,
1542.

W. M. Berhanu, P. Jiang and U. H. E. Hansmann,
2013:
"Simulation of folding and association of
a hometetrameric protein complex in an
allatom Go model."
Phys. Rev. E,
87,
014701.

A. Berkner, P. H. Hauschildt and E. Baron,
2013:
"3D radiative transfer effects in parametrized starspots."
Astronomy and Astrophysics,
550,
A104.

N. A. Bernhardt, W. M. Berhanu and U. H. E. Hansmann,
2013:
"Mutations and crossseeding of
amylin fibrillike oligomers."
J. Phys. Chem. B,
117,
16076.

R. Betancur, R. E. Broughton, E. O. Wiley, K. Carpenter,
J. A. López, C. Li, N. Holcroft, D. Arcila, M. Sanciangco,
J. C. Cureton, F. Zhang, T. Buser, M. Campbell,
J. Ballesteros, A. RoaVaron, S. Willis, W. C. Borden,
T. Rowley, P. Reneau, D. Hough, G. Lu, T. Grande,
G. Arratia and G. Ortí,
2013:
"The tree of life and a new classification of bony fishes."
Plos Currents — Tree of Life,
doi:10.1371/currents.tol.53ba26640df0ccaee75bb165c8c26288.

E. S. Bridge, J. F. Kelly, A. Contina, R. M. Gabrielson,
R. B. MacCurdy and D. W. Winkler,
2013:
"Advances in tracking small migratory birds:
A technical review of lightlevel geolocation."
Journal of Field Ornithology,
84,
212137.

R. E. Broughton, R. Betancur, C. Li, G. Arratia and G. Ortí,
2013:
"Multilocus phylogenetic analysis reveals
the pattern and tempo of bony fish evolution."
Plos Currents — Tree of Life,
doi:10.1371/currents.tol.2ca8041495ffafd0c92756e75247483e.

K. Bui, B. P. Grady, M. C. Saha and D. V. Papavassiliou,
2013:
"Effect of carbon nanotube persistence length
on heat transfer in nanocomposites:
A simulation approach."
Applied Physics Letters,
102
(20),
article no. 203116.

D. R. Buttaccio, N. D. Lange, S. Hahn, R. P. Thomas
and E. J. Davelaar,
2013:
"Explicit awareness supports conditional visual search
in the retrieval guidance paradigm."
In
M. Knauff, M. Pauen, N. Sebanz and I. Wachsmuth,
eds.,
Proceedings of the 35th Annual Conference of
the Cognitive Science Society,
Cognitive Science Society.

A. Cadena and R. M. Slatt,
2013:
"Seismic and sequence stratigraphic interpretation
of the area of influence of the Magdalena Submainre Fan,
offshore northern Colombia."
Interpretation J.,
1
(1).

S. Cai, L. Du, A. L. Gerea, J. B. King, J. You
and R. H. Cichewicz,
2013:
"Spiro fused diterpeneindole alkaloids from
a creekbottomderived Aspergillus terreus."
Org Lett.,
15
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41869.
DOI:10.1021/ol401891z.
Epub 2013 Aug 7.

C. Carley, B. McKinney, L. Sells, C. Zhao and H. Neeman,
2013:
"Using a Shared, Remote Cluster for Teaching HPC."
Proc. IEEE Cluster 2013,
to appear.

B. Chen, X. Dai, E. Baron and R. Kantowski,
2013:
"Effects of Kerr Strong Gravity on Quasar XRay
Microlensing."
The Astrophysical Journal,
769,
131.

B. Chen, X. Dai and E. Baron,
2013:
"Inclinationdependent Active Galactic Nucleus Flux
Profiles from Strong Lensing of the Kerr Spacetime."
The Astrophysical Journal,
762,
122.

J. Cheng,
2013:
"Assimilation of Attenuated Data from Xband Network
Radars Using Ensemble Kalman Filter."
Ph.D. dissertation
(advisor M. Xue),
School of Meteorology,
University of Oklahoma.

C.H. Chuang and Y. Wang,
2013:
"Using Multipoles of the Correlation Function
to Measure H(z), D_A(z), and β(z)
from SDSS Luminous Red Galaxies."
Monthly Notices of the Royal Astronomical Society,
431,
2634.
arXiv:1205.5573.

C.H. Chuang and Y. Wang,
2013:
"Modeling the Anisotropic TwoPoint Galaxy Correlation
Function on Small Scales and Improved Measurements of
H(z), D_A(z), and β(z) from the
Sloan Digital Sky Survey DR7 Luminous Red Galaxies."
Monthly Notices of the Royal Astronomical Society,
435,
255.
arXiv:1209.0210.

R. Cintineo, J. A. Otkin, M. Xue and F. Kong,
2013:
"Evaluating the Accuracy of Planetary Boundary Layer and
Cloud Microphysical Parameterization Schemes in
ConvectionPermitting Ensemble Forecasts using
Synthetic GOES13 Satellite Observations.
Mon. Wea. Rev.,
accepted.

A. J. Clark, R. G. Bullock, T. L. Jensen, M. Xue and F. Kong,
2013:
"Application of objectbased timedependent diagnostics for
tracking precipitation systems in convectionallowing models."
Weather and Forecasting,
submitted.

A. J. Clark, J. Gao, P. T. Marsh, T. Smith, J. S. Kain,
J. Correia Jr., M. Xue and F. Kong,
2013:
"Tornado Pathlength Forecasts from
2010 to 2011 Using Ensemble Updraft Helicity."
Weather and Forecasting,
28,
387407.

D. R. Cole, Ok Salim, A. Phan, G. Rother,
A. Striolo and L. Vlcek,
2013:
"CarbonBearing Fluids at Nanoscale Interfaces."
Procedia Earth and Planetary Science,
7,
175178.

M. C. Coniglio, J. Correia Jr., P. T. Marsh and F. Kong,
2013:
"Verification of convectionallowing WRF model forecasts
of the planetary boundary layer using sounding observations."
Weather and Forecasting,
28,
842862.

A. Contina, E. S. Bridge, N. E. Seavy, J. M. Duckles and
J. F. Kelly,
2013:
"Using Geologgers to Investigate Bimodal Isotope Patterns
in Painted Buntings (Passerina Ciris)."
The Auk,
130
(2),
265272.

D. Dasari, G. F. Shou and L. Ding,
2013:
"Investigation of Independent Components based
EEG Metrics for Mental Fatigue in Simulated ATC Task."
Proc. of the 6th International
IEEE EMBS Neural Engineering Conference,
13311334.

L. Ding, M. Zhu and K. Liao,
2013:
"Wavelet Based Sparse Source Imaging Technique."
Proc. of Annual Int. Conf. of IEEEEMBS,
54185421.

J. Dong, X. Xiao, B. Chen, N. Torbick, C. Jin, G. Zhang
and C. Biradar,
2013:
"Mapping deciduous rubber plantations through
integration of PALSAR and multitemporal
Landsat imagery."
Remote Sensing of Environment,
134,
392402.

J. Dong, G. Zhang, Y. Zhang and X. Xiao,
2013:
"Reply to Wang et al.:
Snow cover and air temperature affect
the rate of changes in spring phenology
in the Tibetan Plateau."
Proceedings of the National Academy of Sciences
of the United States of America,
published ahead of print June 5 2013.
DOI:10.1073/pnas.1306813110.

L. Du, A. J. Robles, J. B. King, D. R. Powell,
A. N. Miller, S. L. Mooberry and R. H. Cichewicz,
2013:
"Crowdsourcing natural products discovery to
access uncharted dimensions of
fungal metabolite diversity."
Angew Chem Int Ed Engl.,
53
(3),
804809.
DOI:10.1002/anie.201306549.
Epub 2013 Nov 27.

J. Duda, X. Wang, F. Kong and M. Xue,
2013:
Using Varied
"Microphysics to Account for Uncertainty in WarmSeason QPF
in a ConvectionAllowing Ensemble."
Mon. Wea. Rev.,
submitted.

A. O. Fierro and L. M. Leslie,
2013:
"Links between Central Western Australian
rainfall variability and largescale climate drivers."
Journal of Climate,
6,
22222246.

A. O. Fierro, E. R. Mansell, C. Ziegler and D. R. MacGorman,
2013:
"The implementation of an explicit charging and
discharge lightning scheme within the WRFARW model:
Benchmark simulations with a continental squall line,
a tropical cyclone and a winter storm."
Monthly Weather Review,
141,
23902415.

A. O. Fierro and L. M. Leslie,
2013:
"Relationships between southeast Australian temperature
anomalies and largescale climate drivers."
Journal of Climate,
conditionally accepted.

J. Gao, M. Xue and D. J. Stensrud,
2013:
"The development of a hybrid EnKF3DVAR algorithm
for stormscale data assimilation."
Adv. Meteor. 2013,
112.
DOI:10.1155/2013/512656.

J. Gao, T. M. Smith, D. J. Stensrud, C. Fu, K. Calhoun,
K. L. Manross, J. Brogden, V. Lakshmanan, Y. Wang,
K. W. Thomas, K. Brewster, and M. Xue,
2013:
"A
realtime weatheradaptive 3DVAR analysis system
for severe weather detections and warnings with
automatic storm positioning capability."
Wea. Forecasting,
28,
727745.

N. A. Gasperoni, M. Xue, R. D. Palmer, J. Gao,
B. L. Cheong, D. Michaud and D. Bodine,
2013:
"Sensitivity of Convective Initiation Prediction to
NearSurface Moisture when Assimilating Radar
Refractivity: Impact Tests using OSSEs."
J. Atmos. Oceanic Technol.,
30,
22812302.
DOI:10.1175/JTECHD1200038.1.

G. Ge, J. Gao and M. Xue,
2013:
"Impact of a diagnostic pressure equation constraint
on tornadic supercell thunderstorms forecasts
initialized using 3DVAR radar data assimilation."
Adv. Meteor. 2013,
112.
DOI:10.1155/2013/947874.

G. Ge, J. Gao and M. Xue,
2013:
"Impacts
of Assimilating Measurements of
Different State Variables with a
Simulated Supercell Storm and
ThreeDimensional Variational Method."
Mon. Wea. Rev.,
141,
27592777.
DOI:http://dx.doi.org/10.1175/MWRD1200193.1.

R. Gordnier, C. Chimakurthi and P. J. Attar,
2013:
"Highfidelity aeroelastic computations of a
flapping wing with spanwise flexibility."
Journal of Fluids and Structures,
40,
86104.

L. Guest,
2013:
"A subsurface study of the Marmaton in
Beaver County, Oklahoma."
unpublished M.S. thesis
(advisor R. Slatt),
ConocoPhillips School of Geology & Geophysics,
University of Oklahoma.

S. Guo, B. Zhang, T. Lin and K. J. Marfurt,
2013:
"Azimuthal AVO Gradient Anisotropic Analysis
on Prediction of Fractures on Barnett Shale.
Unconventional Resources Technology Conference,
Denver CO,
1214 August 2013,
18901899.

Y. Guo, S. H. Hosseini, C. Y. Tang, J. N. Jiang
and R. G. Ramakumar,
2013:
"An Approximate Wind Turbine Control System Model
for Wind Farm Power Control."
IEEE Transactions on Sustainable Energy,
4
(1),
262274.

Y. Guo, W. Wang, C. Y. Tang, J. N. Jiang
and R. G. Ramakumar,
2013:
"Model Predictive and Adaptive Wind Farm
Power Control."
Proc. American Control Conference,
28962903.

S. Hachinger and 21 colleagues [including E. Baron],
2013:
"The UV/optical spectra of the Type Ia supernova SN 2010jn:
a bright supernova with outer layers rich in irongroup
elements."
Monthly Notices of the Royal Astronomical Society,
429,
22282248.

T. A. Ho, R. K. Kalluri, M. M. Biener,
J. Biener and A. Striolo,
2013:
"Partition and Structure of Aqueous
NaCl and CaCl_{2} Electrolytes
in CarbonSlit Electrodes."
J. Phys. Chem. C,
117,
1360913619.

T. A. Ho, R. K. Kalluri, M. M. Biener,
J. Biener and A. Striolo,
2013:
"Partition and Structure of Aqueous NaCl and
CaCl2 Electrolytes in CarbonSlit Electrodes."
J. Phys. Chem. C,
117
1360913619.

T. A. Ho and A. Striolo,
2013:
"Capacitance Enhancement via Electrode Patterning."
J. Chem. Phys.,
139,
204708.

T. A. Ho and A. Striolo,
2013:
"Enhancing the Performance of SuperCapacitors
by Engineering Electrodes and Electrolytes."
AIChE Annual Meeting,
San Francisco CA.

T. A. Ho and A. Striolo,
2013:
"Polarizability Effects in Molecular Dynamics
Simulations of the GrapheneWater Interface."
J. Chem. Phys.,
138,
054117/19.

M. Hu, D. P. Linder, M. Buongiorno Nardelli
and A. Striolo,
2013:
"Hydrogen Adsorption on PlatinumGold Nanoparticles:
A Density Functional Theory Study."
J. Phys. Chem. A,
117,
1505015060.

Y. Hu, D. Devegowda, A. Striolo, T. A. Ho,
A. Phan, F. Civan and R. Sigal,
2013:
"A Pore Scale Study Describing the Dynamics of
Slickwater Distribution in Shale Gas Formations
Following Hydraulic Fracturing."
SPE Unconventional Gas Conference,
paper SPE 164552,
The Woodlands TX.

C. H. Im, L. Ding, Y. W. Wang and S. P. Kimk
2013:
Computational Methods in
Neuroengineering. Computational and
Mathematical Methods in Medicine,
vol. 2013,
article ID 617347,
2 pages.
DOI:10.1155/2013/617347
(editorial).

D. Jack, P. H. Hauschildt and E. Baron,
2013:
"Timedependent radiative transfer with PHOENIX
(Corrigendum)."
Astronomy and Astrophysics,
549,
1.

P. Jiang, F. Yasar and U. H. E. Hansmann,
2013:
"Sampling of Protein Folding Transitions:
Multicanonical Versus Replica Exchange
Molecular Dynamics."
J. Chem. Theor. Comput.,
9,
3816.

A. Johnson, X. Wang, F. Kong and M. Xue,
2013:
"Objectbased evaluation of the impact of
horizontal grid spacing on convectionallowing forecasts."
Mon. Wea. Rev.,
141,
34133425.

C. Jung, C. H. Sun and M. Yuan,
2013:
"An Ontologyenabled Framework for a
Geospatial ProblemSolving Environment."
Computer, Environment, and Urban Systems,
38,
4557.

R. K. Kalluri, M. M. Biener, M. E. Suss, M. D. Merrill,
M. Stadermann, J. D. Santiago, T. F. Baumann, J. Biener
and A. Striolo,
2013:
"Unraveling the Potential and PoreSize
Dependent Capacitance of SlitShaped
Graphitic Carbon Pores in Aqueous Electrolytes."
Physical Chemistry Chemical Physics,
15,
23092320.

Y. L. Kogan,
2013:
"A Cumulus Cloud Microphysics Parameterization for
CloudResolving Models."
J. Atmos. Sci.,
70,
14231436.

D. Konatham, J. Yu, T. A. Ho and A. Striolo,
2013:
"Simulation Insights for GrapheneBased
Water Desalination Membranes.
Langmuir,
29,
1188411897.
Also featured in the cover art of
Langmuir,
29
(38),
September 24 2013.

L. R. Krumholz, L. Wang, D. A. Beck, T. Wang,
M. Hackett, B. Mooney, T. R. Juba, M. J. McInerney,
B. Meyer, J. D. Wall and D. A. Stahl,
2013:
"Membrane protein complex of APS reductase and
Qmo is present in Desulfovibrio vulgaris
and Desulfovibrio alaskensis."
Microbiology,
159,
21622168.

H. Kuebler, D. Booth, J. Sedlacek and J. P. Shaffer,
2013:
"Exploiting Rydberg Atom Surface Phonon
Polariton Coupling for Single Photon Subtraction."
Physical Review A,
88,
043810.

A. LaBryer, P. J. Attar and P. Vedula,
2013:
"A Framework for Optimal Temporal Reduced Order
Modeling of Nonlinear Dynamical Systems."
Journal of Sound and Vibration,
332,
4,
9931010.

A. LaBryer, P. J. Attar and P. Vedula,
2013:
"Optimal Spatiotemporal Reduced Order Modeling
Part I: Proposed Framework."
Computational Mechanics,
52,
2,
417431.

A. LaBryer, P. J. Attar and P. Vedula,
2013:
"Optimal Spatiotemporal Reduced Order Modeling Part II:
Application to a Nonlinear Beam."
Computational Mechanics,
52,
2,
433451.

A. LaBryer, P. J. Attar and P. Vedula,
2013:
"Characterization of SubgridScale Dynamics
for a Nonlinear Beam."
Computers and Structures,
accepted.

A. LaBryer, P. J. Attar and P. Vedula,
2013:
"Optimal spatiotemporal reduced order modeling of
Burgers equation with largeamplitude disturbances."
Proc. 51st Aerospace Sciences Meeting
Including the New Horizons Forum and Aerospace Exposition,
Grapevine TX,
AIAA paper 20130255.

N. D. Lange, R. P. Thomas, D. R. Buttacio, D. A. Illingworth
and E. J. Davelaar,
2013:
"Working memory dynamics bias the generation of beliefs:
The influence of data presentation rate
on hypothesis generation."
Psychonomic Bulletin & Review,
(20)
1,
171176.
DOI: 10.3758/s1342301203169.

N. D. Lange, D. R. Buttaccio, A. N. Sprenger, I. Harbison,
M. R. Dougherty and R. P. Thomas,
2013:
"The essential nature of memory underlying judgment,
decision making, and visual search."
In V. Thompson and A. Feeney, eds.,
Reasoning as Memory,
in press.

N. D. Lange, E. J. Davelaar and R. P. Thomas,
2013:
"Data Acquisition Dynamics and Hypothesis Generation."
Cognitive Systems Research,
Special Issue:
Best of International Conference on Cognitive Modeling,
invited submission.
DOI: 10.1016/j.cogsys.2012.12.006.

N. D. Lange, R. P. Thomas, D. R. Buttaccio
and E. J. Davelaar,
2013:
"Snapshots of working memory:
Using early eye movements to capture temporal dynamics."
In
M. Knauff, M. Pauen, N. Sebanz and I. Wachsmuth,
eds.,
Proceedings of the 35th Annual Conference of
the Cognitive Science Society,
Cognitive Science Society.

N. D. Lange, D. R. Buttaccio, E. J. Davelaar
and R. P. Thomas,
2013:
"Using the Memory Activation Capture (MAC) procedure to
investigate the temporal dynamics of hypothesis generation."
Memory & Cognition,
in press.

T. Le, A. Phan, D. R. Cole and A. Striolo,
2013:
"CO2Propane Mixtures in Silica Pores:
Relation between Structure and Dynamics."
AIChE Annual Meeting,
San Francisco CA.

L. Li,
2013:
"Database Vertical Partitioning on Both Single
Computers and Cluster Computers."
M.S. thesis
(advisor L. Gruenwald),
School of Computer Science,
University of Oklahoma.

K. Liao, R. Xiao, J. M. Gonzalez and L. Ding,
2013:
"Decoding individual finger movements of one hand
using human EEG signals."
PLoS ONE,
under revision.

K. Liao, M. Zhu and L. Ding,
2013:
"A New Wavelet Transform to Sparsely Represent
Cortical Current Densities for EEG/MEG Inverse
Problems."
Computer Methods and Programs in Biomedicine,
in press.
DOI:10.1016/j.cmpb.2013.04.015.

A. V. Lietuvninkas, V. K. Howe, H. H. Sigmarsson
and J. E. Ruyle,
2013:
"Investigation of Conformal Antenna Design Limits."
Proc. 2013 Antenna Applications Symposium,
Allerton Park, Monticello IL.

P. Lundqvist, S. Mattila, J. Sollerman, C. Kozma,
E. Baron, N. L. J. Cox, C. Fransson, B. Leibundgut
and J. Spyromilio,
2013:
"Hydrogen and helium in the spectra
of Type Ia supernovae."
Monthly Notices of the Royal Astronomical Society,
1999.

X.C. Luu, J. Yu and A. Striolo,
2013:
"Ellipsoidal Janus Nanoparticles Simulated at
Water/Oil Interfaces."
AIChE Annual Meeting,
San Francisco CA.

X.C. Luu, J. Yu and A. Striolo,
2013:
"Ellipsoidal Janus Nanoparticles Adsorbed at
WaterOil Interface: Some Evidence of Emergent
Behavior."
J. Phys. Chem. B,
117,
1392213929.

X.C. Luu, J. Yu and A. Striolo,
2013:
"Nanoparticles Adsorbed at the Water/Oil Interface:
Coverage Effects on Structure and Diffusion."
Langmuir,
29,
72217228.

E. R. Mansell and C. L. Ziegler,
2013:
"Aerosol Effects on Simulated Storm Electrification
and Precipitation in a TwoMoment Bulk Microphysics
Model."
J. Atmos. Sci.,
70
(7),
20322050.
DOI:
http://dx.doi.org/10.1175/JASD120264.1.

C. Molinares,
2013:
"Stratigraphy and palynomorphs composition of the
Woodford Shale in the Wyche Farm Shale pit,
Pontotoc County, Oklahoma."
unpublished M.S. thesis
(advisor R. Slatt),
ConocoPhillips School of Geology & Geophysics,
University of Oklahoma.

E. Natenberg, J. Gao, M. Xue and F. H. Carr,
2013:
"MultiDoppler radar analysis and forecast of
a tornadic thunderstorm using a 3D variational
data assimilation technique and ARPS model."
Adv. Meteor. 2013,
118.
DOI:10.1155/2013/281695.

H. Neeman, D. Brunson, J. Deaton, Z. Gray, E. Huebsch,
D. Gentis and D. Horton,
2013:
" The
Oklahoma Cyberinfrastructure Initiative."
Proc. XSEDE'13,
article 70.
DOI: 10.1145/2484762.2484793.

Q. T. Nguyen and D. V. Papavassiliou,
2013:
"Turbulent plane PoiseuilleCouette flow
as a model for fluid slip over superhydrophobic surfaces."
Phys. Rev. E,
88
(6),
063015.
DOI:10.1103/PhysRevE.88.063015.

O. Ozcelik, P. J. Attar, M. C. Altan and J. W. Johnston,
2013:
"Experimental and Numerical Characterization of
the Structural Dynamics of Flapping Beams."
Journal of Sound and Vibration,
332,
21,
53935416.

A. Phan, D. R. Cole and A. Striolo,
2013:
"Liquid Ethanol Simulated on Crystalline Alpha Alumina."
J. Phys. Chem. B,
117,
38293840.

A. Phan, D. R. Cole and A. Striolo,
2013:
"Preferential Adsorption from Liquid EthanolWater
Mixtures in Alumina Pores."
AIChE Annual Meeting,
San Francisco CA.

B. J. Putnam, M. Xue, Y. Jung, N. A. Snook and G. Zhang,
2013:
"The analysis and prediction of microphysical states
and polarimetric variables in a mesoscale convective
system using doublemoment microphysics, multinetwork
radar data, and the ensemble Kalman filter."
Mon. Wea. Rev.,
in press.

M. Razi, P. J. Attar and P. Vedula,
2013:
"Uncertainty Quantification for
Multidimensional Dynamical Systems
Based on Adaptive Numerical Solution of
Liouville Equation."
54th AIAA/ASME/ASCE/AHS/ASC Structures,
Structural Dynamics, and Materials Conference.

M. Razi, P. J. Attar and P. Vedula,
2013:
"Adaptive Numerical Solution of Liouville Equation
For Uncertainty Quantification of Multidimensional
Dynamical Systems."
Proc. 54th AIAA/ASME/ASCE/AHS/ASC Structures,
Structural Dynamics, and Materials Conference
and Colocated Events,
Boston MA,
AIAA paper 20131536.

A. Schenkman, M. Xue and M. Hu,
2013:
"Tornadogenesis in a HighResolution Simulation of
the 8 May 2003 Oklahoma City Supercell."
J. Atmos. Sci.,
in press.

R. S. Schumacher, A. J. Clark, M. Xue and F. Kong,
2013:
"Factors influencing the development and maintenance of
nocturnal heavyrainproducing convective systems in a
stormscale ensemble."
Mon. Wea. Rev.,
141,
27782801.

J. Sedlacek, A. Schwettmann, H. Kuebler
and J. P. Shaffer,
2013:
"Atom Based Vector Microwave Electrometry
Using Rubidium Rydberg Atoms in a Vapor Cell."
Physical Review Letters,
111,
063001.

A. SernaBernal,
2013:
"Geological characterization of the Woodford Shale,
McAlister Cemetary Quarry, Criner Hills, Oklahoma."
unpublished M.S. thesis
(advisor R. Slatt),
ConocoPhillips School of Geology & Geophysics,
University of Oklahoma.

K. Shimose, M. Xue, R. D. Palmer, J. Gao, B. L. Cheong
and D. J. Bodine,
2013:
"Twodimensional
variational analysis of nearsurface moisture from
simulated radar refractivityrelated phase change
observations."
Adv. Atmos. Sci.,
30
(2),
291305.

J. R. Shipley, A. Contina, N. Batbayar, E. S. Bridge,
A. T. Peterson and JF Kelly,
2013:
"Niche conservatism and disjunct populations:
A case study with Painted Buntings (Passerina ciris)."
Auk,
130,
476486.
Featured on the journal cover.

G. F. Shou and L. Ding,
2013:
"Frontal Theta EEG Dynamics in
a Realworld Air Traffic Control Task."
Proc. of Annual Int. Conf. of IEEEEMBS,
54945497.

G. F. Shou and L. Ding,
2013:
"Ongoing EEG Oscillatory Dynamics Suggesting
Evolution of Mental Fatigue in a
Colorword Matching Stroop Task."
Proc. of the 6th International
IEEE EMBS Neural Engineering Conference,
13391342.

J. Simons, M. Yuan, C. Carollo, M. VegaCendejas,
T. Shirley, M. Palomares, P. Roopnarine, L. Arenas,
A. Holmes, C. Mazza, R. Hertog, D. Reed, and J. Poelen,
2013:
"Building Fisheries Trophic Interaction Database for
Management and Modeling Research In the Gulf of Mexico
Large Marine Ecosystem."
Bulletin of Marine Science,
89
(1).
DOI:10.5343/bms.2011.1130.

T. M. Smith, J. Gao, K. M. Calhoun, D. J. Stensrud,
K. L. Manross, K. L. Ortega, C. Fu, D. M. Kingfield,
K. L. Elmore, V. Lakshmanan and C. Riedel,
2013:
"Performance of a realtime 3DVAR analysis
system in the Hazardous Weather Testbed."
Wea. Forecasting,
accepted.

C. Srinivasan and D.V. Papavassiliou,
2013:
"Heat transfer scaling for wall bounded turbulent flows."
Applied Mechanics Review,
65
(3),
article 031002.
DOI::10.1115/1.4024428.

D. R. Stratman, M. C. Coniglio, S. E. Koch and M. Xue,
2013:
"Use of multiple verification methods to evaluate
forecasts of convection from hot and coldstart
convectionallowing models."
Wea. Forecasting,
28,
119138.

A. Striolo,
2013:
"SolidWater Interfaces: Fundamental Observations to
Enhance Practical Devices."
AIChE Annual Meeting,
San Francisco CA.

A. Striolo,
2013:
"Understanding Pickering Emulsions Using
MultiScale Simulations."
AIChE Annual Meeting,
San Francisco CA.

A. Striolo, A. Phan and D. R. Cole,
2013:
"EthanolWater Mixtures Simulated on aAlumina."
ACS 245th National Meeting,
New Orleans LA.

M. Suttipong, B. P. Grady and A. Striolo,
2013:
"SelfAssembly of Aqueous Surfactants on Patterned
Surfaces."
Gordon Research Conference on 'Science of Adhesion,'
Mount Holyoke College MA.

M. Suttipong, B. P. Grady and A. Striolo,
2013:
"SelfAssembled Aqueous Surfactants on
Patterned Surfaces: Insights from
CoarseGrained Simulations."
AIChE Annual Meeting,
San Francisco CA.

M. Suttipong, N. R. Tummala, A. Striolo,
C. Silvera Batista and J. Fagan,
2013:
"SaltSpecific Effects in Aqueous Dispersions
of Carbon Nanotubes."
Soft Matter,
9,
37123719.
Also featured in the cover art of
Soft Matter,
9
(14),
April 14 2013.

S. Wang, M. Xue, A. D. Schenkman and J. Min,
2013:
"An iterative ensemble square root filter and tests
with simulated radar data for storm scale
data assimilation."
Quart. J. Roy. Meteor. Soc.
DOI: 10.1002/qj.2077.

S. Wang, M. Xue and J. Min,
2013:
"A fourdimensional asynchronous ensemble squareroot
filter (4DEnSRF) and tests with simulated radar data."
Quart. J. Roy. Meteor. Soc.,
139,
805819.

Y. Wang, Y. Jung, T. A. Supinie and M. Xue,
2013:
"A hybrid MPI/OpenMP parallel algorithm and
performance analysis for an ensemble square root
filter suitable for dense observations."
J. Atmos. Ocean. Tech.,
30,
13821397.

Y. Wu, D. Devegowda, F. Civan, A. Striolo
and R. Sigal,
2013:
"Microscopic Dynamics of Water and Hydrocarbon
in ShaleKerogen Pores of Potential Mixed Wettability."
2013 Unconventional Resources Conference,
Calgary Canada.

R. Xiao and L. Ding,
2013:
"Evaluation of EEG Features in Decoding
Individual Finger Movements from One Hand."
Computational and Mathematical Methods in Medicine,
article ID 243257.
DOI:10.1155/2013/243257.

R. Xiao, K. Liao and L. Ding,
2013:
"Towards Noninvasive BCI by Decoding
Individual Finger Movements using EEG."
Proc. of the Fifth International
BrainComputer Interface Meeting.

M. Xue, M. Hu and A. Schenkman,
2013:
"Numerical prediction of 8 May 2003 Oklahoma City
tornadic supercell and embedded tornado using ARPS
with assimilation of WSR88D radar data."
Wea. Forecasting,
in press.

M. Xue, J. Schleif, F. Kong, K. W. Thomas, Y. Wang
and K. Zhu,
2013:
"Track and Intensity Forecasting of Hurricanes:
Impact of ConvectionPermitting Resolution and
Ensemble Kalman Filter Initial Condition on
2010 Atlantic Season Forecasts."
Weather and Forecasting,
in press.

M. Xue, F. Kong, K. W. Thomas, J. Gao, Y. Wang,
K. A. Brewster and K. K. Droegemeier,
2013:
"Prediction of convective storms at convectionresolving
1km resolution over continental United States with
radar data assimilation: An example case of 26 May 2008."
Adv. Meteor. 2013,
19.
DOI:10.1155/2013/259052.

F. Yasar, A. K. Sieradzan and U. H. E. Hansmann,
2013:
"Folding and SelfAssembly of
a small Heterotetramer."
Submitted.

H. Yazdani, K. Hatami, T. Hawa and B. P. Grady,
2013:
"AtomicScale Simulation of SensorEnabled
Geosynthetics for Health Monitoring of
Reinforced Soil Slopes and Embankments."
Proc. 2013 GeoCongress,
paper #207.

S. You, J. Zhang and L. Gruenwald,
2013:
"GPUbased Spatial Indexing and Query
Processing Using RTrees."
Proc. ACM SIGSPATIAL BigSpatial'13 Workshop,
Orlando FL.

M. Yuan and A. Nara,
2013:
"Spacetime Analytics of Tracks for the
Understanding of Patterns of Life."
In
SpaceTime Integration in Geography and GIScience:
Research Frontiers in the US and China,
edited by M.P. Kwan, D. Richardson, D. Wang and C. Zhou,
Springer,
accepted.

N. Yussouf, J. Gao, D. J. Stensrud and G. Ge,
2013:
"The impact of mesoscale environmental uncertainty
on the prediction of a tornadic supercell storm
using ensemble data assimilation approach."
Adv. Meteor. 2013,
115.
DOI:10.1155/2013/731647.

B. Zhang, K. Zhang, S. Guo and K. J. Marfurt,
2013:
"Nonstretching NMO correction of prestack
timemigrated gathers using a matchingpursuit algorithm."
Geophysics,
78
(1),
U9U18.

G. Zhang, J. Dong, Y. Zhang, and X. Xiao,
2013:
"Reply to Shen et al.:
No evidence to show nongrowing season NDVI affects
spring phenology trend in the Tibetan Plateau
over the last decade."
Proceedings of the National Academy of Sciences
of the United States of America,
published ahead of print May 9 2013.
DOI:10.1073/pnas.1305593110.

G. Zhang, Y. Zhang, J. Dong and X. Xiao,
2013:
"Greenup dates in the Tibetan Plateau have
continuously advanced from 1982 to 2011."
Proceedings of the National Academy of Sciences
of the United States of America,
110,
11,
43094314.

Y. Zhang, Y. Hong, J. J. Gourley, X.G. Wang,
J. Gao, H. Vergara and B. Yong,
2013:
"Assimilation of Passive Microwave Streamflow Signals
for Improving Flood Forecasting: A First Study in
Okavango River Basin, Africa."
IEEE Journal of Special Topics in
Applied Earth Observations and Remote Sensing,
6,
23752390.
DOI:10.1109/JSTARS.2013.2251321.

M. Zhu,
2013:
"EEG/MEG sparse source imaging and
its application in epilepsy."
Ph.D. dissertation
(advisor L. Ding),
School of Electrical & Computer Engineering,
University of Oklahoma.
(Recipient of the
Oklahoma Center for Neuroscience Travel Award, 2011,
and the
Robberson Conference Presentation Travel Grant, 2012.)

M. Zhu, W. B. Zhang, D. Dickens and L. Ding,
2013:
"Multiple penalized sparse source imaging in
estimating current sources from MEG."
NeuroImage,
accepted.

M. Zhu, W. B. Zhang, D. Dickens and L. Ding,
2013:
"Waveletbased Sparse Source
Imaging in Localizing Epileptic
Sources for Partial Epilepsy."
Proc. of the 6th International
IEEE EMBS Neural Engineering Conference,
537540.

M. Zhu, W. B. Zhang, D. L. Dickens, J. A. King
and L. Ding,
2013:
"Sparse MEG Source Imaging for Reconstructing
Dynamic Epileptic Sources of Interictal Spikes."
Journal of Clinical Neurophysiology,
30
(4),
313328.
2012
2012 Publications Facilitated by OSCER Rounds/Help Sessions
Coming soon
Other 2012 Publications Facilitated by OU Research IT

M. O. Abouelresh and R. M. Slatt,
2012:
"Lithofacies and sequence stratigraphy of
the Barnett Shale in the eastcentral
Fort Worth Basin, Texas, U.S.A."
AAPG Bulletin,
122.

I. Y. Akkutlu and E. Fathi,
2012:
"Multiscale Gas Transport in Shales
with Local Kerogen Heterogeneities."
SPE Journal,
17
(4),
10021011.

C. D. Althoff,
2012:
"Characterization of depositional megacycles
in the Woodford trough of central Oklahoma."
M.S. thesis
(advisor R. Slatt),
ConocoPhillips School of Geology & Geophysics,
University of Oklahoma.
(Held as confidential until July 2014.)

R. J. Ambrose, R. C. Hartman, M. DiazCampos,
I. Y. Akkutlu and C. H. Sondergeld,
2012:
"Shale GasinPlace Calculations Part I:
New PoreScale Considerations."
SPE Journal,
17
(1),
219229.

J. D. Amorocho,
2012:
"Sequence stratigraphy and seismic
interpretation of the Upper Devonianlower
Mississippian Woodford Shale in the Cherokee
Platform;
a characterization approach for
unconventional resources."
M.S. thesis
(advisor R. Slatt),
ConocoPhillips School of Geology & Geophysics,
University of Oklahoma.

P. J. Attar, W. Romberg, B. Morris,
J. Johnston and R. N. Parthasarathy,
2012:
"Fluid and Structural Dynamic Response of
Membrane Micro Air Vehicles at
Moderate to High Angle of Attack."
AIAA Journal,
50
(7),
15251537.

E. Baron, P. H. Hauschildt, B. Chen and S. Knop,
2012:
"A 3D radiative transfer framework.
X. Arbitrary velocity fields in the comoving frame."
Astronomy and Astrophysics,
548,
A67.

E. T. Baruch, R. M. Slatt and K. J. Marfurt,
2012:
"Seismic analysis of the Barnett Shale and Ellenburger
unconformity southwest of Newark East Field,
Fort Worth Basin, Texas."
In J. Breyer (ed),
Shale Reservoirs:
Giant resources for the 21st century,
AAPG Memoir,
97,
403418,
in press.

L. Bauerdick, D. Benjamin, K. Bloom, B. Bockelman,
D. Bradley, S. Dasu, M. Ernst, R. Gardner, A. Hanushevsky,
H. Ito, D. Lesny, P. McGuigan, S. McKee, O. Rind,
H. Severini, I. Sfiligoi, M. Tadel, I. Vukotic, S. Williams,
F. Wuerthwein, A. Yagil and W. Yang,
2012:
"Using Xrootd to Federate Regional Storage."
J. Phys.: Conf. Ser.,
396,
042009.

K. K. Beasley and M. A. Nanny,
2012:
"Potential Energy Surface for Anaerobic Oxidation of
Methane via Fumarate Addition."
Environmental Science and Technology.
DOI: 10.1021/es3009503.

M. Berenguer, M. Surcel, I. Zawadzki, M. Xue and F. Kong,
2012:
"The diurnal cycle of precipitation from
continental radar mosaics and
numerical weather prediction models.
Part II:
Intercomparison among numerical models and with nowcasting."
Mon. Wea. Rev.,
140,
26892705.

W. M. Berhanu and U. H. E. Hansmann,
2012:
"Sidechain hydrophobicity and the stability
of Aβ(1622) aggregates."
Protein Science,
21,
1837.

W. M. Berhanu and U. H. E. Hansmann,
2012:
"Structure and Dynamics of Amyloidβ
Segmental Polymorphisms."
PLoS ONE,
7
(7),
e41479.
DOI:10.1371/journal.pone.0041479.

S. Binet, P. Calafiura, M. K. Jha, W. Lavrijsen, C. Leggett,
D. Lesny, H. Severini, D. Smith, S. Snyder, M. Tatarkhanov,
V. Tsulaia, P. VanGemmeren and A. Washbrook,
2012:
"Multicore in production: advantages and limits of the
multiprocess approach in the ATLAS experiment."
J. Phys.: Conf. Ser.,
368,
012018.

S. Bleckley, J. W. Stone and S. J. Schroeder,
2012:
"Crumple: A Method for Complete Enumeration of All
Possible PseudoknotFree RNA Secondary Structures."
PLoS ONE,
e52414.

M. Bodenhamer, F. R. Willett, A. J. Suminski,
N. G. Hatsopoulos and A. H. Fagg, 2012:
"A Feedback Error Learning Approach to
OnlineAdaptive Decoding for Dynamic Prosthetic Arm Control."
Proc. of Computational and Systems Neuroscience
(Cosyne),
I38,
to appear.

J. Bothwell and M. Yuan,
2012:
"A Spatiotemporal GIS Framework Applied to
the Analysis of Changes in Temperature Patterns."
Transactions in GIS.
Preprint online at
10.1111/j.14679671.2012.01327.x.

K. Bui, H. Nguyen, C. Cedric, A. Striolo and
D. V. Papavassiliou,
2012:
"Thermal Behavior of DualWalled Carbon Nanotubes and
Evidence of Thermal Rectification."
Journal of Physical Chemistry C,
116,
44494454.

A. B. Cerato, A. Taghavi, K. K. Muraleetharan
and G. A. Miller,
2012:
"An Educational Module to Demonstrate
the Seismic Behavior of in Piles
Improved and Unimproved Soft Soils."
Journal of Professional Issues in
Engineering Education and Practice.
DOI: 10.1061/(ASCE)EI.19435541.0000112

A. R. Chain,
2012:
"Stratigraphy and composition of the Woodford
Shale in depositionally updip and downdip wells,
Anadarko Basin, Oklahoma."
M.S. thesis
(advisor R. Slatt),
ConocoPhillips School of Geology & Geophysics,
University of Okalhoma.

A. Clark, J. Gao, P. T. Marsh, T. M. Smith, J. S. Kain,
J. Correia Jr., M. Xue and F. Kong,
2012b:
"Tornado path length forecasts from 2011 using
a 3dimensional object identification algorithm
applied to ensemble updraft helicity."
Wea. Foreacasting,
conditionally accepted.

A. J. Clark, J. S. Kain, P. T. Marsh, J. Correia Jr.,
M. Xue and F. Kong,
2012:
"Forecasting tornado path lengths using a 3dimensional
object identification algorithm applied to
convectionallowing forecasts."
Weather and Forecasting,
27,
10901113.

A. J. Clark, S. J. Weiss, J. S. Kain, I. L. Jirak,
M. Coniglio, C. J. Melick, C. Siewert, R. A. Sobash,
P. T. Marsh, A. R. Dean, M. Xue, F. Kong, K. W. Thomas,
Y. Wang, K. Brewster, J. Gao, X. Wang, J. Du, D. R. Novak,
F. Barthold, M. J. Bodner, J. J. Levit, C. B. Entwistle,
T. L. Jensen and J. James Correia,
2012:
"An Overview of the 2010 Hazardous Weather Testbed
Experimental Forecast Program Spring Experiment."
Bull. Amer. Meteor. Sci.,
93,
5574.

C.H. Chuang and Y. Wang,
2012:
"Measurements
of H(z) and D(z) from
the TwoDimensional TwoPoint Correlation Function of
Sloan Digital Sky Survey Luminous Red Galaxies."
Monthly Notices of the Royal Astronomical Society,
426,
226.
arXiv: 1102.2251

C.H. Chuang, Y. Wang and M. D. P. Hemantha,
"A
Robust Distance Measurement and Dark Energy
Constraints from the SphericallyAveraged
Correlation Function of Sloan Digital Sky Survey
Luminous Red Galaxies."
Monthly Notices of the Royal Astronomical Society,
423,
1474.
arXiv:1008.4822

A. J. Clark, J. S. Kain, P. T. Marsh, J. Correia, Jr.,
M. Xue and F. Kong,
2012:
"Forecasting tornado path lengths using
a 3dimensional object identification algorithm
applied to convectionallowing forecasts.
Weather and Forecasting,
in press.

A. J. Clark, S. J. Weiss, J. S. Kain, I. L. Jirak,
M. Coniglio, C. J. Melick, C. Siewert, R. A. Sobash,
P. T. Marsh, A. R. Dean, M. Xue, F. Kong, K. W. Thomas,
Y. Wang, K. Brewster, J. Gao, X. Wang, J. Du, D. R. Novak,
F. Barthold, M. J. Bodner, J. J. Levit, C. B. Entwistle,
T. L. Jensen and J. J. Correia,
2012:
"An Overview of the 2010 Hazardous Weather Testbed
Experimental Forecast Program Spring Experiment."
Bull. Amer. Meteor. Sci.,
93,
5574.

M. C. Coniglio, J. Correia Jr., P. T. Marsh, F. Kong,
2012:
"Verification of convectionallowing WRF model forecasts
of the planetary boundary layer using sounding observations."
Weather and Forecasting,
submitted.

D. Crooks, P. Calafiura, R. Harrington, M. Jha, T. Maeno,
S. Purdie, H. Severini, S. Skipsey, V. Tsulaia, R. Walker
and A. Washbrook,
2012:
"Multicore job submission and grid resource scheduling
for ATLAS AthenaMP."
Proceedings of the 19th International Conference on
Computing in High Energy and Nuclear Physics,
J. Phys.: Conf. Ser.,
396,
032115.

M. R. Dougherty, R. Michael and R. P. Thomas,
2012:
"Robust decision making in a nonlinear world."
Psychological Review,
119
(2),
321344.

K. M. Dresback, E. M. Tromble, D. G. Reid, R. L. Kolar,
T. C. G. Kibbey, C. A. Blain, R. A. Luettich
and C. M. Szpilka,
2012:
"Evaluation of Baroclinic ADCIRC Using a ProcessOriented
Test Along a Slope."
Estuarine and Coastal Modeling,
Proc. 12th International Conference,
M. L. Spaulding, eds.,
American Society of Civil Engineers,
8698.

H. Fan and A. Striolo,
2012:
"Nanoparticles Effects on
WaterOil Interfacial Tension."
Phys. Rev. E,
86,
051610/111.
Impact Factor (2011): 2.255.

H. Fan and A. Striolo,
2012:
"Mechanistic Study of Droplets Coalescence in
Pickering Emulsions."
Soft Matter,
8,
95339538.
DOI: 10.1039/C2SM26416A.

E. Fathi, A. Tinni and I. Y. Akkutlu,
2012:
"Correction to Klinkenberg slip theory for
gas flow in nanocapillaries."
International Journal of Coal Geology,
special issue on Shale,
103,
5159.
DOI:10.1016/j.coal.2012.06.008.

R. Ferdinand,
2012:
"Galerkin Finite Element Solution of
Groundwater Contaminant Model."
International Journal of Pure and Applied Mathematics,
3.

J. Freedman, S. Benjamin, J. Wilczak, M. Marquis,
C. Clark, J. Cline, J. W. Zack, J. Manobianco,
I. Flores, J. Schroeder, B. Ancell, K. Brewster,
S. Basu, K. D. Orwig and V. Banunarayanan,
2012:
"The Wind Forecasting Improvement Project:
Description and Results from
the Southern Study Region."
Proc. 11th Intl Workshop on
Large Scale Integration of
Wind Power into Power Systems,
Lisbon, Portugal.

W. F. Frick, P. M. Stepanian, J. F. Kelly, K. W. Howard,
C. M. Kuster and P. B. Chilson,
2012:
"Climate and Weather Impact Timing of
Emergence of Bats."
PLoS ONE,
7
(8),
e42737.
DOI:10.1371/journal.pone.0042737.

B. Friesen, E. Baron, D. Branch, B. Chen, J. T. Parrent
and R. C. Thomas,
2012:
"Supernova Resonancescattering Line Profiles in the
Absence of a Photosphere."
The Astrophysical Journal Supplement Series,
203,
12.

J. E. Funk, R. M. Slatt and D. R. Pyles,
2012:
"Quantification of static connectivity
between deepwater channels and
stratigraphically adjacent architectural
elements using outcrop analogs."
Amer. Assoc. Petrol. Geol.,
96,
277300.

J. Gao and D. J. Stensrud,
2012:
"Assimilation of reflectivity data in
a convectivescale, cycled 3DVAR framework
with hydrometeor classification:
results from an idealized thunderstorm."
J. Atmos. Sci.,
69,
10541065.

M. Gately, M. Yeary and C. Yang,
2012:
"Algorithm for Jointly Optimizing
Quantization and MultipleConstant Multiplication."
ACM Transactions on Design Automation of
Electronic Systems,
17
(4),
article 42,
124.

M. Gately, M. Yeary and C. Tang,
2012:
"Multiple RealConstant Multiplication with
Improved Cost Model and Greedy and Optimal Searches."
Proc. IEEE International Symposium on
Circuits and Systems (ISCAS),
588591.

G. Ge, J. Gao and M. Xue,
2012a:
"Incorporating Diagnostic Pressure Equations
as a Weak Constraint into
a StormScale Three Dimensional Variational
Radar Data Assimilation System —
Simulated Data Experiments."
J. Atmos. Oceanic Technol.,
29,
10751092.

G. Ge, J. Gao and M. Xue,
2012b:
"Impact of Different Model Variables on
Stormscale Threedimensional Variational Data Assimilation."
Mon. Wea. Rev.,
conditionally accepted.

G. Ge, J. Gao, M. Xue and K. K. Droegemeier,
2012:
"Diagnostic pressure equation as a weak
constraint in a stormscale three dimensional
variational radar data assimilation system."
J. Atmos. Ocean. Tech.,
29,
10751092.

S. Gonzalez de la Hoz, M. Villaplana, Y. Kemp,
M. Gasthuber, H. Wolters, D. Benjamin, J. Pardo,
A. Pacheco, F. Sanchez, X. Espinal, H. Severini,
W. Bhimji, L. Levinson, D. Van Der Ster and S. Campana,
2012:
"Example of shared ATLAS Tier2 and Tier3 facilities."
Proceedings of the 19th International Conference on
Computing in High Energy and Nuclear Physics,
J. Phys.: Conf. Ser.,
396,
032051.

R. E. Gordnier and P. J. Attar,
2012:
"Aeroelastic Simulations of
an Aspect Ratio Two Flexible Membrane Wing."
50th AIAA Aerospace Sciences Meeting
including
the New Horizons Forum and Aerospace Exposition,
AIAA,
711.

S. Guo, B. Zhang, K. J. Marfurt
and A. CabralesVargas,
2012:
"Noise suppression using preconditioned
leastsquares prestack time migration:
Application to the Mississippian Limestone.
SEG Technical Program Expanded Abstracts 2012,
16.

Y. Guo,
2012:
"Control and Optimization of VariableSpeed
Wind Turbines and LargeScale Wind Farms."
Ph.D. dissertation
(advisor C. Y. Tang),
School of Electrical & Computer Engineering,
University of Oklahoma.

T. Ho, D. Argyris, D. R. Cole and A. Striolo,
2012:
"Aqueous NaCl and CsCl Solutions Confined in
Crystalline SlitShaped Silica Nanopores of
Varying Degree of Protonation."
Langmuir,
28,
12561266.

B. Holland and X. Wang,
2012:
"Effects of sequential or simultaneous assimilation of
observations and localization methods on the performance of
the ensemble Kalman filter."
Q. J. R. Meteo. Soc.,
in press.

C. Jin, X. Xiao, L. Merbold, A. Arneth, E. Veenendaal
and W. Kutsch,
2013:
"Phenology and gross primary production of two dominant
savanna woodland ecosystems in Southern Africa."
Remote Sensing of Environment,
135,
189201.

A. Johnson and X. Wang,
2012:
"Verification and calibration of neighborhood and
objectbased probablistic precipitation forecasts from
a multimodel convectionallowing ensemble."
Mon. Wea. Rev.,
in press.

Y. Jung, M. Xue and M. Tong,
2012:
"Ensemble Kalman filter analyses of the
2930 May 2004 Oklahoma tornadic thunderstorm
using one and twomoment bulk microphysics
schemes, with verification against
polarimetric radar data."
Mon. Wea. Rev.,
140,
14571475.

J. S. Kain, M. C. Coniglio, J. Correia, A. C. Clark,
P. T. Marsh, C. Zeigler, V. Lakshmanan, S. D. Miller,
S. R. Dembek, S. J. Weiss, F. Kong and M. Xue,
2012:
"Convective Initiation: A Feasibility Study for
Probabilistic Forecasts Based on Explicit Numerical
Guidance."
Bulletin of the American Meteorological Society,
94,
12131225.

A. K. Karna and D. V. Papavassiliou,
2012:
"Nearwall velocity structures
that drive turbulent transport from
a line source at the wall."
Physics of Fluids,
24,
035102,
21 pages.

J. F. Kelly, J. R. Shipley, P. B. Chilson, K. W. Howard,
W. F. Frick and T. H. Kunz,
2012:
"Quantifying
animal phenology in
the aerosphere at a continental scale
using NEXRAD weather radars."
Ecosphere,
3
(2),
16.

B. J. Killian,
2012:
"Sequence stratigraphy of the Woodford Shale,
Anadarko Basin, Oklahoma:
Implications on regional Woodford target
correlation.
M.S. thesis
(advisor R. Slatt),
ConocoPhillips School of Geology & Geophysics,
University of Oklahoma.

Y. L. Kogan and A. Belochitski,
2012:
"Parameterization of Cloud
Microphysics Based on Full Integral Moments."
J. Atmos. Sci.,
69,
22292242.

Y. L. Kogan, D. B. Mechem and K. Choi,
2012:
"Effects of SeaSalt Aerosols on
Precipitation in Simulations of Shallow Cumulus."
J. Atmos. Sci.,
69,
463483.

D. Konatham, D. V. Papavassiliou and A. Striolo,
2012:
"Thermal Boundary Resistance at
the GrapheneGraphene Interface
Estimated by Molecular Dynamics Simulations."
Chemical Physics Letters,
527,
4750.

J. M. Kurdzo and R. D. Palmer,
2012:
"Objective Optimization of Weather Radar Networks
for LowLevel Coverage Using a Genetic Algorithm."
J. Atmos. Oceanic Technol.,
29,
807821.
DOI:
http://dx.doi.org/10.1175/JTECHD1100076.1

A. LaBryer, P. J. Attar and P. Vedula,
2012:
"An optimal prediction method for underresolved
timemarching and timespectral schemes."
International Journal for Multiscale
Computational Engineering.
DOI:10.1615/IntJMultCompEng.2012004317.

A. Labryer, P. J. Attar and P. Vedula,
2012:
"Subgridscale dynamics for a nonlinear beam."
AIAA Paper,
1711.

S. Lakshmivarahan and J. M. Lewis,
2012:
"Nudging Methods: A Critical Overview."
Chapter in
Data Assimilation for Atmospheric, Oceanic and Hydrologic
Applications Vol II,
edited by S. K. Park and L. Liang,
Springer Verlag.

S. Lakshmivarahan, J. M. Lewis and D. Phan,
2012:
"Data assimilation as a problem in optimal tracking:
Application of Pontryagin's minimum principle."
Journal of Atmospheric Sciences,
to appear.

N. D. Lange, R. P. Thomas and E. J. Davelaar,
2012:
"Data acquisition dynamics and hypothesis generation."
In:
N. Russwinkel, U. Drewitz, J. Dzaack, H. van Rijn and
F. Ritter,
eds.,
Proceedings of the 11th International Conference on
Cognitive Modelling,
Universitaetsverlag der TU Berlin.

N. D. Lange, R. P. Thomas and E. J. Davelaar,
2012:
"Temporal dynamics of hypothesis generation:
Influences of data serial order, data consistency,
and elicitation timing."
Frontiers in Psychology: Cognitive Science,
3:
215.
DOI:
10.3389/fpsyg.2012.00215.

N. D. Lange, R. P. Thomas, D. R. Buttaccio
and E. J. Davelaar,
2012:
"Catching a glimpse of working memory:
Topdown capture as a tool for
measuring the content of the mind."
Attention, Perception, & Psychophysics,
74
(8),
15627.
DOI: 10.3758/s1341401203789.

L. L. Lee and G. Pellicane,
2012:
"A potential distribution induced mapping of
free energies for simple fluids."
Physica A,
391,
19421951.

J. M. Lewis and S. Lakshmivarahan,
2012:
"A Question of Adequacy of observations in
Variational Data Assimilation."
Chapter in
Data Assimilation for Atmospheric, Oceanic and Hydrologic
Applications Vol II,
edited by S. K. Park and L. Liang,
Springer Verlag.

L. Li and L. Gruenwald,
2012:
"Autonomous Database Partitioning using Data Mining
on Single Computers and Cluster Computers."
Proc. 16th International Database
Engineering and Applicaitons (IDEAS).

K. Liao, M. Zhu, L. Ding, S. Valette,
W. B. Zhang and D. Dickens,
2012:
"Sparse Imaging of cortical electrical current
densities via wavelet transforms."
Physics in Medicine and Biology,
57,
68816901.

A. McGovern, N. Troutman, R. A. Brown, J. K. Williams
and J. Abernethy,
2012:
"Enhanced Spatiotemporal Relational Probability
Trees and Forests."
Data Mining and Knowledge Discovery,
to appear.

S. McKee, A. Lake, P. Laurens, H. Severini, T. Wlodek,
S. Wolff and J. Zurawski,
2012:
"Monitoring the US ATLAS Network Infrastructure with
perfSONARPS."
J. Phys.: Conf. Ser.,
396,
042038.

D. B. Mechem, S. E. Yuter and S. P. de Szoeke,
2012:
"Thermodynamic and aerosol controls in southeast Pacific
stratocumulus."
J. Atmos. Sci.,
69,
12501266.

R. Parthasarathi, N. R. Tummala and A. Striolo,
2012:
"Embedded Single Walled Carbon Nanotubes
Locally Perturb DOPC Phospholipid Bilayers."
J. Phys. Chem. B,
116,
1276912782.
Impact Factor (2011): 3.696.

N. H. Pham, R. S. Voronov, S. B. VanGordon, V. I. Sikavitsas
and D. V. Papavassiliou,
2012:
"Predicting the stress distribution within
scaffolds with ordered architecture."
Biorheology
49
(4),
235247.

A. Phan, T. A. Ho, D. R. Cole and A. Striolo,
2012:
"Molecular Structure and Dynamics in
Thin Water Films at Metal Oxide Surfaces:
Magnesium, Aluminum, and Silicon Oxide Surfaces."
Journal of Physical Chemistry C,
116,
1596215973.
Impact Factor (2011): 4.805.
Also featured in the cover art of
J. Phys. Chem. C,
volume 116,
issue # 30,
August 2nd,
2012.

C. K. Potvin, D. Betten, L. J. Wicker, K. L. Elmore
and M. I. Biggerstaff,
2012:
"3DVAR vs. traditional dualDoppler wind retrievals
of a simulated supercell thunderstorm."
Mon. Wea. Rev.,
140,
34873494.

D. E. Resasco, S. Sitthisa, J. Faria, T. Prasomsri and
M. P. Ruiz,
2012:
"Furfurals as chemical platform for biofuels production."
Chapter in
Heterogeneous Catalysis in Biomass to
Chemicals and Fuels,
D. Kubicka and I. Kubickova, eds.,
ISBN 9788130804620,
Research Signpost,
155188.

J. K. Sabet, C. Ghotbi, F. Dorkoosh and A. Striolo,
2012:
"Solubilities of Acetaminophen in Supercritical
Carbon Dioxide with and without Menthol Cosolvent:
Measurement and Correlation."
Scientia Iranica,
19,
619625.

M. S. Sadik and L. Gruenwald,
2012:
"In Search of Outliers in Multidimensional Data Streams."
IEEE International Conference on Data Engineering
(ICDE),
submitted.

R. S. Schumacher, A. J. Clark, M. Xue, F. Kong,
2012:
"Factors influencing the development and maintenance of
nocturnal heavyrainproducing convective systems
in a stormscale ensemble."
Mon. Wea. Rev.,
submitted.

A. Schenkman,
2012:
"Exploring Tornadogenesis with Highresolution
Simulations Initialized with Real Data."
Ph.D. dissertation
(advisor M. Xue),
School of Meteorology,
University of Oklahoma.

A. Schenkman, M. Xue and A. Shapiro,
2012:
"Tornadogenesis in a simulated mesovortex
within a realdatainitialized mesoscale
convective system."
J. Atmos. Sci.,
69,
33723390.

A. Schwettmann,
2012:
"Atom Chip Setup for Cold Rydberg Atom Experiments."
Ph.D. dissertation
(advisor J. Shaffer),
Homer L. Dodge Department of Physics & Astronomy,
University of Oklahoma.

J. Sedlacek, A. Schwettmann, H. Kubler, R. Low, T. Pfau
and J. P. Shaffer,
2012:
"Quantum Assisted Electrometry using
Bright Atomic Resonances."
Nature Physics,
accepted for publication.
arXiv:1205:4461.

Z. T. Segele, L. M. Leslie and P. J. Lamb,
2013:
"Weather
Research and Forecasting Model simulations
of extended warmseason heavy precipitation episode
over the US Southern Great Plains:
data assimilation and microphysics sensitivity
experiments."
Tellus A,
65,
19599.
http://dx.doi.org/10.3402/tellusa.v65i0.19599

A. Shapiro, B. Burkholder and E. Fedorovich,
2012:
"Analytical and numerical investigation of
twodimensional katabatic flow resulting from
local surface cooling."
Bound.Layer Meteor.,
145,
249272.

C. S. Sheik, T. W. Mitchell, F. Zakria Rizvi,
Y. Rehman. M. Faisal, S. Hasnain, M. J. McInerney
and L. R. Krumholz,
2012:
"Exposure of soil microbial communities to chromium
and arsenic alters their diversity and structure."
PLoS ONE,
7
(6),
e40059.
DOI:10.1371/journal.pone.0040059.

C. Shi, J. A. Wallace and J. K. Shen,
2012:
"Thermodynamic coupling of
protonation and conformational equilibria in proteins:
theory and simulation."
Biophys J,
102,
15901597.

L. Shi, D. B. Brunski, V. I. Sikavitsas, M. B. Johnson
and A. Striolo,
2012:
"Friction Coefficients for
MechanicallyDamaged Bovine Articular Cartilage."
Biotechnology and Bioengineering,
109,
17691778.

G. F. Shou, L. Ding and D. Dasari,
2012:
"Towards a natural and realistic task in EEG:
A Fourier independent component analysis study."
Journal of Neuroscience Method,
209
(1),
2234.
DOI:10.1016/j.jneumeth.2012.05.022.

A. K. Sieradzan, U. H. E. Hansmann, H. A. Scheraga
and A. Liwo,
2012:
"Extension of UNRES force field to treat
polypeptide chains with Daminoacid residues."
J. Chem. Theor. Comp.,
8,
4746.

A. K. Sieradzan, A. Liwo and U. H. E. Hansmann,
2012:
"Folding and selfassembly of a small protein complex."
J. Chem. Theor. Comp,
8,
3416.

R. M. Slatt, P. R. Philp, N. O'Brien, Y. Abousleiman,
P. Sing, E. V. Eslinger, R. Perez, R. Portas, E. T. Baruch,
K. J. Marfurt and S. MadridArroyo,
2012:
"Poreto regionalscale, integrated characterization
workflow for unconventional gas shales."
In J. Breyer (ed),
Shale Reservoirs:
Giant resources for the 21st century,
AAPG Memoir,
97,
127151,
in press.

R. M. Slatt, R. Portas, N. Buckner, Y. Abousleiman,
N. O'Brien, M. Tran, R. Sierra, P. Philp, A. MiceliRomero,
R. Davis and T. Wawrzyniec,
2012:
"Outcrop/behind outcrop (quarry) multiscale characterization
of the Woodford gas shale, Oklahoma."
In J. Breyer (ed),
Shale Reservoirs:
Giant resources for the 21st century,
AAPG Memoir,
97,
382402,
in press.

R. M. Slatt and N. Rodriguez,
2012:
"Comparative sequence stratigraphy and organic
geochemistry of gas shales:
Commonality or coincidence?"
Journal of Natural Gas Science and Engineering,
8,
68  84.
DOI:10.1016/j.jngse.2012.01.008.

N. Snook, M. Xue and Y. Jung,
2012:
"Ensemble probabilistic forecasts of a tornadic
mesoscale convective system from ensemble Kalman
filter analyses using WSR88D and CASA radar data."
Mon. Wea. Rev.,
140,
21262146.

C. Srinivasan, and D. V. Papavassiliou,
2012:
"Comparison of backwards and forwards
scalar relative dispersion in turbulent shear flow."
Int. J. Heat and Mass Transf.,
55,
56505664.

J. Tallant, D. Booth, S. Rittenhouse, H. Sadghepour and
J. P. Shaffer,
2012:
"Observation of Blue Shifted Ultralong Range
Cs2 Rydberg Molecules."
Physical Review Letters,
109,
173202.
arXiv:1205:4974.

R. M. Todd, E. Jiang, R. L. Galbraith, J. R. Cruz and
R. W. Wood,
2012:
"TwoDimensional VoronoiBased Model and Detection for
Shingled Magnetic Recording."
In
Digests IEEE International Magnetics Conference,
Vancouver, Canada,
p. HT07.

R. M. Todd, E. Jiang, R. L. Galbraith, J. R. Cruz
and R. W. Wood,
2012:
"Twodimensional Voronoibased model and detection
for shingled magnetic recording."
IEEE Trans. Magn.,
48
(11),
45944597.

E. M. Tromble, R. L. Kolar, K. M. Dresback
and R. A. Luettich,
2012:
"River Flux Boundary Considerations in a Coupled
HydrologicHydrodynamic Modeling System."
Estuarine and Coastal Modeling,
Proc. 12 International Conference,
M. L. Spaulding, eds.,
American Society of Civil Engineers,
510527.

R. S. Voronov, S. Van Gordon, R. L. Shambaugh,
D. V. Papavassiliou and V. I. Sikavitsas,
2012:
"3D Tissue Engineered Construct Analysis via
Conventional High Resolution MicroCT without XRay Contrast."
Tissue Engineering Part C Methods,
accepted.

J. A. Wallace and J. K. Shen,
2012:
"Unraveling a trapandtrigger mechanism in
the pHsensitive selfassembly of spider silk proteins."
J Phys Chem Lett,
3,
658662.

Q.W. Wang and M. Xue,
2012:
"Convective initiation on 19 June 2002 during IHOP:
Highresolution simulations and analysis of the
mesoscale structures and convection initiations."
J. Geophy. Res.,
117,
D12107.

Y. Wang, J. K. Shen, S. J. Schroeder,
2012:
"Nucleotide Dynamics at the Asite Cleft in the
Peptidyltransferase Center of H. marismortui
50 S Ribosomal Subunits."
J. Phys. Chem. Lett. 3,
10071010.

F. R. Willett, A. H. Fagg, A. J. Suminski and
N. G. Hatsopoulos,
2012:
"Improving neural control of a simulated arm by
decoding intended future movement."
Proc. of Computational and Systems Neuroscience
(Cosyne),
III39,
to appear.

H. Yazdani, K. Hatami, T. Hawa and B. P. Grady,
2012:
"Molecular Dynamics Simulation of
Sensor Enabled Geosynthetics."
Proc. TechConnect World 2012,
paper #918.

J. Yi, B. H. Morrow, A. L. O. Campbell, J. K. Shen and
G. B. RichterAddo,
2012:
"Nitric oxide coupling mediated by iron porphyrins:
the N.N bond formation step is facilitated by
electrons and a proton."
Chem Commun,
48,
90419043.

K. Zhao, M. Xue and W.C. Lee,
2012:
"Assimilation of GBVTDretrieved winds from
singleDoppler radar for shortterm forecasting
of Super Typhoon Saomai (0608) at landfall."
Quart. J. Roy. Meteor. Soc.,
138,
10551071.

F. Zou, R. M. Slatt, R. Bastidas and B. Ramirez,
2012:
"Integrated outcrop 'reservoir' characterization,
modeling and simulation of the Jackfork group at
the Baumgartner quarry area, western Arkansas:
Implications to Gulf of Mexico deepwater
exploration and production."
AAPG Bulletin,
96,
14291448.
2011
2011 Publications Facilitated by OSCER Rounds/Help Sessions

S. B. VanGordon, R. S. Voronov, T. B. Blue, R. L. Shambaugh,
D. V. Papavassiliou and V. I. Sikavitsas,
2011:
"Effects of Scaffold Architecture on Preosteoblastic
Cultures under Continuous Fluid Shear."
Industrial & Engineering Chemistry Research,
50
(2),
620629,
DOI: 10.1021/ie902041v.
Available
online.
Other 2011 Publications Facilitated by OU Research IT

I. Y. Akkutlu and E. Fathi,
2011:
"Multiscale Gas Transport in Shales with
Local Kerogen Heterogeneities."
Proc. SPE Annual Technical Conference and Exhibition
2011.

D. Argyris, P. D. Ashby and A. Striolo,
2011:
"Assessing the Structure of Interfacial
Water via AFM:
Insights from Simulations."
ACS Nano,
5,
22152223.

D. Argyris, T. A. Ho, D. R. Cole and A. Striolo,
2011:
"Molecular Dynamics Studies of
Interfacial Water at the Alumina Surface,
Journal of Physical Chemistry C,
115,
20382046.

D. Argyris, T. Ho, D. Papavassiliou and A. Striolo,
2011:
"Equilibrium and Transport Properties of
Aqueous Electrolytes within
Narrow SlitShaped Pores:
From Molecular Dynamics Results to
Nanofluidic Devices."
Chemical Engineering Transactions,
24,
13631368.

P. J. Attar, R. E. Gordnier, J. W. Johnston,
W. A. Romberg and R. N. Parthasarathy,
2011:
"Aeroelastic Analysis of Membrane Micro Air Vehicles.
Part 1: Flutter and Limit Cycle Analysis for
FixedWing Configurations."
ASME Journal of Vibration and Acoustics,
133
(2),
02100810210088.

P. J. Attar, R. E. Gordnier, J. W. Johnston,
W. A. Romberg and R. N. Parthasarathy,
2011:
"Aeroelastic Analysis of Membrane Micro Air Vehicles.
Part 2: Computational Study of a Plunging Membrane Airfoil."
ASME Journal of Vibration and Acoustics,
133
(2),
02100910210096.

D. Bodine, D. Michaud, R. D. Palmer,
P. L. Heinselman, J. Brotzge, N. Gasperoni,
B. L. Cheong, M. Xue and J. Gao:
"Understanding radar refractivity: sources of uncertainty."
J. Atmos. Ocean Tech.,
50,
25432560.

K. Bui, H. M. Duong, A. Striolo and D. V. Papavassiliou,
2011:
"Effective heat transfer properties of
graphene sheet nanocomposites and
comparison to carbon nanotube nanocomposites."
Journal of Phys. Chemistry C,
115
(10),
38723880.
DOI: 10.1021/jp109978x.

K. N. D. Bui, B. P. Grady and D. V. Papavassiliou,
2011:
"Heat transfer in
high volume fraction CNT nanocomposites:
Effects of internanotube thermal resistance."
Chem. Phys. Let.,
508
(46),
248251.
DOI: 10.1016/j.cplett.2011.04.005.

J. S. Cabral, J. M. Kondo, L. F. Goncalves, V. A. Nascimento,
L. G. Marcassa, D. Booth, J. Tallant, A. Schwettmann,
K. R. Overstreet, J. Sedlacek and J. P. Shaffer,
2011:
"Effect of Electric Fields on
Ultracold Rydberg Atom Interactions."
Journal of Physics B
(Special Issue on Rydberg Atom Physics),
44,
184007.

W. Chang and J. R. Cruz,
2011:
"Intertrack Interference Mitigation on Staggered
BitPatterned Media,"
Digests IEEE International Magnetics Conference,
Taipei Taiwan,
AU09.

W. Chang and J. R. Cruz,
2011:
"Intertrack Interference Mitigation on Staggered
BitPatterned Media."
IEEE Transactions on Magnetics,
47
(10),
25512554.

A. J. Clark, J. S. Kain, D. J. Stensrud, M. Xue,
F. Kong, M. C. Coniglio, K. W. Thomas, Y. Wang,
K. Brewster, J. Gao, X. Wang, S. J. Weiss, D. Bright
and J. Du,
2011:
"Probabilistic precipitation forecast skill
as a function of ensemble size and spatial scale
in a convectionallowing ensemble."
Mon. Wea. Rev.,
139,
14101418.

J. Dong, M. Xue and K. K. Droegemeier,
2011:
"The analysis and impact of simulated highresolution
surface observations in addition to radar data for
convective storms with an ensemble Kalman filter."
Meteor. Atmos. Phy.,
112,
4161.

K. M. Dresback, J. G. Fleming, B. O. Blanton, C. Kaiser,
J. J. Gourley, E. M. Tromble, R. A. Luettich, R. L. Kolar,
Y. Hong, S. Van Cooten, H. J. Vergara, Z. L. Flamig,
H. M. Lander, K. E. Kelleher and K. L. NemunaitisMonroe,
2011:
"Skill Assessment of a RealTime Forecast System
Utilizing a Coupled Hydrologic and Coastal Hydrodynamic
Model During Hurricane Irene."
Continental Shelf Research,
71,
7894.

Brent E. Eskridge,
2011:
"Extrapolation of Regularity Using Indirect Encodings."
In
IEEE Congress on Evolutionary Computation,
128087.

J. Elston , B. Argrow, E. Frew, A. Houston and J. Straka,
2011:
"Evaluation of Unmanned Aircraft Systems for
Severe Storm Sampling using
HardwareintheLoop Simulations."
Journal of Aerospace Computing, Information, and
Communication,
8
(9),
269294.

H. Fan, D. E. Resasco and A. Striolo,
2011:
"Amphiphilic silica nanoparticles at the decanewater
interface: Insights from atomistic simulations."
Langmuir,
27,
52645274.

A. O. Fierro, E. R. Mansell, D. R. MacGorman and
C. Ziegler,
2012:
"Application of a lightning data assimilation technique in
the WRFARW model at cloudresolving scales
for the Tornado Outbreak of 24 May 2011.
Monthly Weather Review,
140,
26092627.

A. O. Fierro, E. J. Zipser, M. A. LeMone, Straka J. M. and
J. Simpson,
2012:
"Tropical oceanic hot towers:
Need they be undilute to transport energy from
the boundary layer to the upper troposphere effectively?
An answer based on trajectory analysis of
a simulation of a TOGA COARE convective system."
Journal of the Atmospheric Sciences,
69,
195213.

J. Gao and D. J. Stensrud,
2011:
"Assimilation of Reflectivity Data
in a ConvectiveScale, Cycled 3DVAR Framework
with Hydrometeor Classification,
J. Atmos. Sci.,
conditionally accepted.

M. Gately, M. Yeary and C. Tang,
2011:
"Reducedhardware digital filter design via
joint quantization and multiple
constant multiplication optimization."
IEEE International Conference on
Acoustics, Speech, and Signal Processing,
43684371,
Prague.

M. Gee and P. J. Attar,
2011:
"High Fidelity Aeroelastic Simulation of
a Membrane Airfoil Undergoing FigureofEight Kinematics."
Proc. 52nd AIAA/ASME/ASCE/AHS/ASC Structures,
Structural Dynamics and Materials Conference,
Denver CO,
AIAA Paper 20111711.

R. Gordnier, C. Chimakurthi and P. J. Attar,
2011:
"HighFidelity Aeroelastic Computations of
a Flapping Wing with Spanwise Flexibility."
Proc. 49th AIAA Aerospace Sciences Meeting including
the New Horizons Forum and Aerospace Exposition,
Orlando FL,
AIAA Paper 2011570.

N. G. Hatsopoulos, A. J. Suminski and A. H. Fagg,
2011:
"Using Naturalistic Kinesthetic Feedback for
Brain Machine Control."
Proc. International Conference of the
IEEE Engineering in Medicine and
Biology Society (EMBC11).

T. A. Ho, D. Argyris, D. V. Papavassiliou,
A. Striolo, L. L. Lee and D. R. Cole,
2011:
"Interfacial Water on Crystalline Silica:
A Comparative Molecular Dynamics Simulation Study."
Molecular Simulation,
37,
172195.

T. A. Ho, D. V. Papavassiliou, L. L. Lee and A. Striolo,
2011:
"Water Can Slip on a Hydrophilic Surface."
Proceedings of the National Academy of Sciences of
the United States of America,
108,
1617016175.
Impact Factor (2010): 9.771.

B. Holland,
2011:
"Effects of sequential or simultaneous assimilation of
observations and localization methods on
the performance of the ensemble Kalman filter."
M.S. thesis
(advisor X. Wang),
School of Meteorology,
University of Oklahoma.

N. S. Jacobson and D. L. Myers,
2011:
"High Temperature Vaporization of B2O3(l)
Under Reducing Conditions."
J. Phys. Chem. B,
to appear.
http://pubs.acs.org/doi/abs/10.1021/jp206480d

A. Johnson,
2011:
"Clustering analysis, verification and calibration of
a convectionallowing ensemble forecast system."
M.S. thesis
(advisor X. Wang),
School of Meteorology,
University of Oklahoma.

A. Johnson, X. Wang, F. Kong and M. Xue,
2011a:
"Hierarchical cluster analysis of
a convectionallowing ensemble during
the Hazardous Weather Testbed 2009 Spring Experiment.
Part I:
Development of objectoriented cluster analysis method
for precipitation fields."
Mon. Wea. Rev.,
139,
36733693.

A. Johnson, X. Wang, M. Xue and F. Kong,
2011b:
"Hierarchical cluster analysis of
a convectionallowing ensemble during
the Hazardous Weather Testbed 2009 Spring Experiment.
Part II:
Seasonlong ensemble clustering and
implication for optimal ensemble design."
Mon. Wea. Rev.,
139,
36943710.

R. K. Kalluri, D. Konatham and A. Striolo,
2011:
"Aqueous NaCl Solutions within Charged CarbonSlit Pores:
Partition Coefficients and Density Distributions from
Molecular Dynamics Simulations."
Journal of Physical Chemistry C,
115,
1378613795.
Impact Factor (2010): 4.520.

S. M. Kang, E. Fathi, R. J. Ambrose, I. Y. Akkutlu and
R. F. Sigal,
2011:
"Carbon Dioxide Storage Capacity of OrganicRich Shales."
SPE Journal,
16
(4),
842855.

Anjani K. C. Varthy Karna,
2011:
"Computational investigation of the effects of
turbulence structures on transport mechanisms,"
M.S. thesis (advisor D. Papavassiliou),
University of Oklahoma.

D. Konatham, K. Bui, D. V. Papavassiliou and A. Striolo,
2011:
"Thermally Conductive
GrapheneBased Nanocomposites,
Molecular Physics,
109,
97111.
Invited article.
DOI:10.1080/00268976.2010.533707.

L. L. Lee,
2011:
"Constructing a new closure theory based on
the thirdorder OrnsteinZernike equation and
a study of the adsorption of simple fluids."
Journal of Chemical Physics,
135,
204706.

X. Li, M. J. McInerney, D. A. Stahl
and L. R. Krumholz,
2011:
"Metabolism of H2 by Desulfovibrio alaskensis G20
During Syntrophic Growth on Lactate."
Microbiology,
151,
29122921.

C. Liu, H. Soltani, J. D. Pinilla, K. K. Muraleetharan,
A. B. Cerato and G. A. Miller,
2011:
"Centrifuge Investigation of Seismic Behavior of
Pile Foundations in Soft Clays."
Proc. GeoFrontiers 2011:
GSP 211, Advances in Geotechnical Engineering.
Dallas TX,
585594.

A. McGovern, D. J. Gagne II, N. Troutman, R. A. Brown,
J. Basara and J. Williams,
2011:
"Using Spatiotemporal Relational Random Forests
to Improve our Understanding of
Severe Weather Processes."
Statistical Analysis and Data Mining,
special issue on the best of the
2010 NASA Conference on Intelligent Data Understanding,
4
(4),
407429.

A. McGovern, D. H. Rosendahl, R. A. Brown and
K. K. Droegemeier,
2011:
"Identifying Predictive MultiDimensional
Time Series Motifs:
An application to severe weather prediction."
Data Mining and Knowledge Discovery,
22
(1),
232258.

V. M. Melnikov, D. S. Zrnic, R. J. Doviak, P. B. Chilson,
D. B. Mechem and Y. L. Kogan,
2011:
"Prospects of the WSR88D radar for
cloud studies."
Journal of Applied Meteorology and
Climatology,
50,
859872.
DOI: 10.1175/2010JAMC2303.1.

H. Moradi, M. Falahpour, H. H. Refai and P. G. LoPresti,
2011:
"A Diversity Combining Approach for
MIMO FSO Nodes with Misaligned Receivers."
Proc. IEEE Globecom'11,
Houston TX,
accepted.

H. Moradi, H. H. Refai and P. G. LoPresti,
2011:
"SwitchandStay and SwitchandExamine
Dual Diversity for High Speed FSO Links."
IET Optoelectronics,
accepted.

H. Moradi, H. H. Refai and P. G. LoPresti,
2011:
"A Switched Diversity Approach for
Multireceiving Optical Wireless Systems."
Journal of Applied Optics,
50
(29),
56065614.

H. Moradi, H. H. Refai, P. G. LoPresti and M. Atiquzzaman,
2011:
"Mobile FSO Nodes in SIMO Setup
under Transmitter Misalignment."
Wiley Wireless Communications and Mobile Computing,
accepted.

H. Moradi, H. H. Refai, P. G. LoPresti and M. Atiquzzaman,
2011:
"Diversity Combining for Mobile FSO Nodes in SIMO Setup."
Proc. 7th International Wireless Communications and
Mobile Computing
(IEEE IWCMC'11),
Istanbul, Turkey,
22432248.

B. H. Morrow, Y. Wang, J. A. Wallace, P. H. Koenig and
J. K. Shen,
2011:
"Simulating pH titration of a single surfactant in
ionic and nonionic micelles."
J Phys Chem B,
115,
1498014990.

B. H. Morrow, D. E. Resasco, A. Striolo and
M. Buongiorno Nardelli,
2011:
"CO Adsorption on Noble Metal Clusters:
LocalEnvironment Effects."
Journal of Physical Chemistry C,
115,
56375647.

M. Nagao, S. Chawang and T. Hawa,
2011:
"Interlayer distance dependence of thickness fluctuations
in a swollen lamellar phase."
Soft Matter,
7,
6598.

O. Ozcelik, P. J. Attar and M. C. Altan,
2011:
"Experimental and Computational Characterization of
the Nonlinear Vibration Response of Plunging Beams."
52nd AIAA/ASME/ASCE/AHS/ASC Structures,
Structural Dynamics and Materials Conference,
Denver CO,
AIAA Paper 20111775.

C. K. Potvin, A. Shapiro, M. I. Biggerstaff
and J. M. Wurman,
2011:
"The VDAC technique:
A variational method for detecting and characterizing
convective vortices in multiple Doppler radar data."
Mon. Wea. Rev.,
139,
25932613.

T. Prasomsri, A. T. To, S. Crossley, W. E. Alvarez
and D. E. Resasco,
2011:
"Catalytic conversion of anisole over HY and HZSM5
zeolites in the presence of different hydrocarbon mixtures."
Applied Catalysis B: Environmental,
106,
204211.

M. P. Ruiz, J. Faria, M. Shen, S. Drexler, T. Prasomsri
and D. E. Resasco,
2011:
"Nanostructured CarbonMetal Oxide Hybrids as
Amphiphilic Emulsion Catalysts."
ChemSusChem,
4,
964974.

M. S. Sadik and L. Gruenwald,
2011:
"An Adaptive Outlier Detection Technique for Data Streams."
Proc. 23rd Scientific and Statistical Database Management
Conference (SSDBM).

S. Sadik and L. Gruenwald,
2011:
"Online Outlier Detection for Data Streams."
Proc. 15th International Database
Engineering and Applications (IDEAS).

A. Schenkman, M. Xue, A. Shapiro, K. Brewster
and J. Gao,
2011:
"The analysis and prediction of
the 89 May 2007 Oklahoma tornadic mesoscale
convective system
by assimilating WSR88D and CASA radar data
using 3DVAR.
Mon. Wea. Rev.,
139,
224246.

A. Schenkman, M. Xue, A. Shapiro, K. Brewster
and J. Gao,
2011:
"Impact of CASA radar and Oklahoma mesonet
data assimilation on
the analysis and prediction of tornadic mesovortices
in a MCS."
Mon. Wea. Rev.,
139,
34223445.

C. S. Sheik, W. H. Beasley, M. S. Elshahed, X. Zhou,
Y. Luo and L. R. Krumholz,
2011:
"Effect of warming and drought on grassland
microbial communities."
ISME J.,
19.

S. Sitthisa, W. An and D. E. Resasco,
2011:
"Selective Conversion of Furfural to Methylfuran over
Silicasupported NiFe Bimetallic Catalysts."
Journal of Catalysis,
284,
90101.

S. Sitthisa, T. Pham, T. Prasomsri, T. Sooknoi,
R. G. Mallinson and D. E. Resasco,
2011:
"Conversion of furfural and 2methylpentanal on Pd/SiO2
and PdCu/SiO2 catalysts."
Journal of Catalysis,
280,
1727.

R. M. Slatt and N. R. O'Brien,
2011:
"Pore types in the Barnett and Woodford gas shales:
contribution to understanding
gas storage and migration pathways
in fine grained rocks."
AAPG Bull.,
20172030.

N. Snook, M. Xue and Y. Jung,
2011:
"Analysis of a tornadic mesoscale convective vortex
based on Ensemble Kalman Filter assimliation of
CASA Xband and WSR88D radar data."
Mon. Wea. Rev.,
139,
34463468.

A. M. Sprenger, M. R. Dougherty, S. M. Atkins,
A. M. FrancoWatkins, R. P. Thomas, N. Lange and B. Abbs,
2011:
"Implications of cognitive load for hypothesis generation
and probability judgment."
Frontiers in PsychologyCognitive Science,
2,
115.

C. Srinivasan and D. V. Papavassiliou,
2011:
"Prediction of turbulent Prandtl number in
wall flows with Lagrangian simulations."
Ind. Eng. Chem. Res.,
50
(15),
88818891.
DOI: 10.1021/ie1019497.

C. Srinivasan and D. V. Papavassiliou,
2011:
"Direction of scalar transport in turbulent channel flow."
Physics of Fluids,
23
(11),
115105,
21 pages.

A. Striolo,
2011:
"From Interfacial Water to Macroscopic Observables:
A Review."
Adsorption Science and Technology,
29,
211258.
Invited article.
Also featured on the cover page.
Impact Factor (2010): 0.559.

A. J. Suminski, F. R. Willett, A. H. Fagg, M. Bodenhamer and
N. G. Hatsopoulos,
2011:
"Continuous Decoding of Intended Movements with
a Hybrid Kinetic and Kinematic Brain Machine Interface."
Proc. International Conference of the
IEEE Engineering in Medicine and
Biology Society (EMBC11).

M. Suttipong, N. R. Tummala, B. Kitiyanan and A. Striolo,
2011:
"Role of Surfactant Molecular Structure on Self Assembly:
Aqueous SDBS On Carbon Nanotubes."
Journal of Physical Chemistry C,
115,
1728617296.
Also featured in the cover art of
J. Phys. Chem. C,
35,
Sep 8 2011.
Impact Factor (2010): 4.520.

R. L. Tanamachi,
2011:
"Multiple cyclic tornado production modes in the
5 May 2007 Greensburg, Kansas supercell storm."
Ph.D. dissertation
(advisor H. Bluestein),
School of Meteorology,
University of Oklahoma.

E. M. Tromble,
2011:
"Advances Using the ADCIRC Hydrodynamic Model:
Parameter Estimation and Aspects of
Coupled HydrologicHydrodynamic Flood Inundation Modeling."
Ph.D. dissertation
(advisor R. Kolar),
School of Civil Engineering & Environmental Science,
University of Oklahoma, 2011.

N. R. Tummala, L. Shi and A. Striolo,
2011:
"Molecular Dynamics Simulations of
Surfactants at the SilicaWater Interface:
Anionic vs. Nonionic Headgroups."
Journal of Colloid and Interface Science,
362,
135143.

S. Van Cooten, K. E. Kelleher, K. Howard J. Zhang,
J. J. Gourley, J. S. Kain, K. NemunaitisMonroe, Z. Flamig,
H. Moser, A. Arthur, C. Langston, R. L. Kolar, Y. Hong,
K. M. Dresback, E. M. Tromble, H. Vergara, R. A. Luettich,
B. Blanton, H. Lander, K. Galluppi, J. Losego, C. A. Blain,
J. Thigpen, K. Mosher, D. Figurskey, M. Moneypenny, J. Blaes,
J. Orrock, R. Bandy, C. Goodall, R. Bandy, D. Eslinger,
J. Payne, G. Olmi, J. Feldt, J. Schmidt, T. Hamill, R. Bacon,
R. Stickney and L. Spence,
2011:
"The CIFLOW Project:
Tracking Precipitation from the Sky to Summit to Sea."
Bulletin of the American Meteorological Society,
92,
14271442.
DOI: 10.1175/2011BAMS3150.1.

M. C. van Zanten, B. B. Stevens, L. Nuijens, A. P. Siebesma,
A. Ackerman, F. Burnet, A. Cheng, F. Couvreaux, H. Jiang,
M. Khairoutdinov, Y. Kogan, D. C. Lewellen,
D. Mechem, K. Nakamura, A. Noda, B. J. Shipway, J. Slawinska,
S. Wang and A. Wyszogrodzki,
2011:
"Controls on precipitation and cloudiness in
simulations of tradewind cumulus as observed during RICO."
J. Adv. Model. Earth Syst.,
3,
M06001.
DOI:10.3894/JAMES.2011.3.5.

J. A. Wallace and J. K. Shen,
2011:
"Continuous constant pH molecular dynamics in
explicit solvent with pHbased replica exchange."
J. Chem. Theory Comput.,
7,
26172629.

J. A. Wallace, Y. Wang, C. Shi, J. K. Pastoor, B.L. Nguyen,
K. Xia and J. K. Shen,
2011:
"Towards accurate prediction of pKa values for
internal protein residues:
the importance of
conformational relaxation and desolvation energy."
Proteins,
79,
3364.3373.

X. Wang,
2011:
"Application of the WRF hybrid ETKF3DVAR
data assimilation system for hurricane track forecasts."
Wea. Forecasting,
26,
868884.

Y. Wang, J. A. Wallace, P. H. Koenig and J. K. Shen,
2011:
"Molecular dynamics simulations of ionic and nonionic
micelles with a generalizedBorn implicitsolvent model."
J. Comput. Chem.,
32,
23482358.
2010
2010 Publications Facilitated by OSCER Rounds/Help Sessions

M. Diaz Campos,
2010:
"Uncertainties in shale gas
inplace calculations:
Molecular simulation approach."
M.S. thesis (advisor Y. Akkutlu),
Mewbourne School of Petroleum & Geological Engineering,
University of Oklahoma.

A. Fitz Gibbon, P. Gray, D. A. Joiner, T. Murphy, H. Neeman,
R. M. Panoff, C. Peck and S. Thompson,
2010:
"Teaching High Performance Computing to Undergraduate Faculty
and Undergraduate Students."
Proceedings of TeraGrid 2010.
Best Paper: Education, Outreach & Training Track.

C. C. Kiser, T. A. Handy, E. C. Lemley, D. V. Papavassiliou
and H. J. Neeman,
2010:
"Reynolds Number Dependence for Laminar Flow Loss
Coefficients in Tee and Wye Junctions."
Proceedings of ASME 2010 3rd Joint USEuropean Fluids
Engineering Summer Meeting and 8th International
Conference on Nanochannels, Microchannels, and Minichannels
(FEDSM2010ICNMM2010),
FEDSMICMM201031026.

P. Moisant, H. Neeman and A. Zlotnick,
2010:
"Exploring the Paths of (Virus) Assembly."
Biophysical Journal,
99
(5),
13501357.

H. Neeman, H. Severini, D. Wu, K. Kantardjieff,
2010:
"Teaching High Performance Computing via Videoconferencing."
ACM Inroads,
1
(1),
6771.

R. Voronov,
2010:
"Fluid Shear Stress and Nutrient Transport Effects Via
Lattice Boltzmann and Lagrangian Scalar Tracking Simulations
of Cell Culture Media Perfusion through
Artificial Bone Tissue Engineering Constructs
Imaged With MicroCT."
Ph.D. dissertation
(advisor D. Papavassiliou),
School of Chemical, Biological & Materials Engineering,
University of Oklahoma.

R. S. Voronov, S. VanGordon, V. I. Sikavitsas and
D. V. Papavassiliou,
2010:
"Computational modeling of flowinduced shear stresses
within 3D saltleached porous scaffolds imaged via microCT."
Journal of Biomechanics,
43
(7),
12791286.
DOI: 10.1016/j.jbiomech.2010.01.007.

R. S. Voronov, S. B. VanGordon, V. I. Sikavitsas and
D. V. Papavassiliou,
2010:
"Efficient Lagrangian scalar tracking method for
reactive local mass transport simulation through
porous media."
International Journal for Numerical Methods in Fluids,
DOI: 10.1002/fld.2369.

R. S. Voronov, S. VanGordon, V. I. Sikavitsas and
D. V. Papavassiliou,
2010:
"Distribution of FlowInduced Stresses in
Highly Porous Media."
Applied Physics Letters,
97,
024101.
Other 2010 Publications Facilitated by OU Research IT

P. Adhikari, Y. Hong, K. R. Douglas, D. B. Kirschbaum,
J. J. Gourley, R. Adler and G. R. Brakenridge,
2010:
"A Digitized Global Flood Inventory (19982008):
compilation and preliminary results."
J. Nat. Hazard.
DOI: 10.1007/s1106901095372.

C. C. Agbalaka and D. S. Oliver,
"Joint Updating of
Petrophysical Properties and Discrete Facies Variables from
Assimilating Production Data Using EnKF."
SPE Reservoir Evaluation & Engineering,
accepted.

D. Argyris, D. R. Cole and A. Striolo,
2010:
"IonSpecific Effects Under Confinement:
The Role of Interfacial Water."
ACS Nano,
4,
20352042.

T. Ashley, D. Wu, R. Watkins, H. Neeman and B. Howard,
2010:
"Modeling Tumor Invasion: Assessing Erlang for the
Modeling of Molecular/Cellular Dynamics."
Proceedings of
Trends
in Functional Programming 2010,
paper 27.

P. J. Attar, D. Tang and E. H. Dowell,
2010:
"Nonlinear Aeroelastic Study for Folding Wing Structures."
AIAA Journal,
48,
(10),
October 2010,
21872195.
DOI: 10.2514/1.44868.

P. J. Attar, J. W. Johnston, W. A. Romberg,
R. N. Parthasarathy and B. J. Morris,
2010:
"A Characterization of Limit Cycle Oscillations in
Membrane Wing Micro Air Vehicles at Low Angle of Attack."
Proc.
3rd Joint USEuropean Fluids Engineering Summer Meeting and
8th International Conference on
Nanochannels, Microchannels, and Minichannels,
Montreal Canada,
FEDSMICNMM201030674.

P. J. Attar, R. E. Gordnier, J. W. Johnston, W. A. Romberg
and
R. N. Parthasarathy,
2010:
"Aeroelastic Analysis of Membrane Micro Air Vehicles.
Part 1:
Flutter and Limit Cycle Analysis for
FixedWing Configurations."
Journal of Vibration and Acoustics,
in
press.
DOI: 10.1115/1.4002129.

P. J. Attar, R. E. Gordnier, J. W. Johnston, W. A. Romberg
and
R. N. Parthasarathy,
2010:
"Aeroelastic Analysis of Membrane Micro Air Vehicles.
Part 2:
Computational Study of a Plunging Membrane Airfoil."
Journal of Vibration and Acoustics,
in press.
DOI: 10.1115/1.4002134.

K. A. Brewster, K. W. Thomas,
J. Gao, J. Brotzge, M. Xue, Y. Wang,
2010:
"A Nowcasting System Using
Full Physics Numerical Weather Prediction
Initialized with CASA and NEXRAD Radar Data."
Proc. 25th Conference on Severe Local Storms,
Denver CO.

K. A. Brewster, J. G. LaDue, M. C. Coniglio,
M. P. Foster, T. Marshall, G. S. Garfield,
2010:
"Forecasting Supercell Storms:
Application of Operational Tools and
CuttingEdge Numerical Model Guidance in VORTEX2."
Proc. 25th Conference on Severe Local Storms,
Denver CO.

J. S. Cabral, J. M. Kondo, L. F. Goncalves, L. G. Marcassa,
D. Booth, J. Tallant and J. P. Shaffer,
2010:
"Manipulation of Quantum State Transfer in
Cold Rydberg Atom Collisions."
New Journal of Physics,
12,
093023.

W. Chang,
2010:
"Advanced Signal Processing for Magnetic Recording on
Perpendicularly Magnetized Media."
Ph.D. dissertation
(advisor J. R. Cruz),
School of Electrical & Computing Engineering,
University of Oklahoma.

W. Chang and J. R. Cruz,
2010:
"RS Plus LDPC Codes for Perpendicular
Magnetic Recording."
Digests IEEE International Magnetics Conference,
Washington DC,
GH13.

W. Chang and J. R. Cruz,
2010:
"RS Plus LDPC Codes for Perpendicular
Magnetic Recording."
IEEE Transactions on Magnetics,
46
(6),
14161419.

W. Chang and J. R. Cruz,
2010:
"An Improved BeliefPropagation Decoder
for LDPCCoded PartialResponse Channels."
IEEE Transactions on Magnetics,
46
(7),
26392648.

W. Chang and J. R. Cruz,
2010:
"InterTrack Interference Mitigation for
BitPatterned Magnetic Recording."
IEEE Transactions on Magnetics,
46
(11),
38993908.

S. Chawang,
2010:
"The effect of interlayer distance on thickness fluctuations
in a swollen lamellar phase: A molecular dynamics study."
M.S. thesis (advisor T. Hawa),
School of Aerospace & Mechanical Engineering,
University of Oklahoma,
December 2010.

Y. Chen and D. S. Oliver,
2010:
"Localization of EnsembleBased Control Setting Updates for
Production Optimization in Large Fields."
SPE Journal,
in revision.

Y. Chen and D. S. Oliver,
2010:
"Crosscovariances and localization for EnKF in
multiphase flow data assimilation."
Computational Geosciences,
in press.
DOI: 10.1007/s1059600991746.

J. Crofford, B. E. Eskridge and D. F. Hougen,
2010:
"Applying the triple parameter hypothesis to maintenance
scheduling."
Proc. Genetic and Evolutionary Computation Conference,
799806.

M. R. P. Dougherty, R. P. Thomas and N. Lange,
2010:
"Toward an integrative theory of hypothesis generation,
probability judgment, and information search."
The Psychology of Learning and Motivation,
52.

D. T. Dawson II, M. Xue, J. A. Milbrandt and M. K. Yau,
2010:
"Comparison of evaporation and cold pool development
between singlemoment and multimoment
bulk microphysics schemes
in idealized simulations of tornadic thunderstorms."
Mon. Wea. Rev.,
138,
11521171.

J. Dong,
2010:
"Applications of Ensemble Kalman Filter Data Assimilation:
From Convective Thunderstorms to Hurricanes."
Ph.D. dissertation
(advisor M. Xue),
School of Meteorology,
University of Oklahoma.

K. M. Dresback, R. L. Kolar, C. A. Blain,
C. M. Szpilka, A. M. Szpilka, R. A. Luettich
and T.. Shay,
2010:
"Development and Application of
the Coupled HYCOM and ADCIRC System."
Estuarine and Coastal Modeling,
Proceedings of the Eleventh International Conference,
M. L. Spaulding (eds.),
American Society of Civil Engineers,
259277.

B. E. Eskridge and D. F. Hougen,
2010:
"Extending Adaptive Fuzzy Behavior Hierarchies to Multiple
Levels of Composite Behaviors."
Robotics and Autonomous Systems,
58
(9),
10761084.
DOI: 10.1016/j.robot.2010.05.003.

B. E. Eskridge and D. F. Hougen,
2010:
"State and Action Abstraction in the
Development of Agent Controllers."
Autonomous Agents,
Vedran Kordic, ed.,
INTECH,
Chapter 1,
125.

G. Ge, J. Gao, K. Brewster and M. Xue,
2010:
"Impacts of beam broadening and earth curvature on
3D variational radar data assimilation radial velocity
with two Doppler radars."
J. Atmos. Ocean Tech.,
27,
617636.

R. Gordnier, P. J. Attar, S. Chimakurthi and C. Cesnik,
2010:
"Implicit LES Simulations of a Flexible Flapping Wing."
Proc. 51st AIAA Structures, Structural Dynamics and
Materials Conference.
Orlando FL,
AIAA20102960.

J. W. Johnston, W. Romberg, P. J. Attar and R. Parthasarathy,
2010:
"Experimental Characterization of
Limit Cycle Oscillations in
Membrane Wing Micro Air Vehicles."
Journal of Aircraft,
47,
(4),
JulyAugust 2010,
13001308.
DOI: 10.2514/1.47258.

Y. Jung, M. Xue and G. Zhang,
2010:
"Simultaneous estimation of
microphysical parameters and atmospheric state
using simulated polarimetric radar data and
ensemble Kalman filter
in the presence of observation operator error."
Mon. Wea. Rev.,
138,
539562.

Y. Jung, M. Xue and G. Zhang,
2010:
"Simulations of polarimetric radar signatures of
a supercell storm
using a twomoment bulk microphysics scheme."
J. Appl. Meteor. Climatol.,
49,
146163.

J. S. Kain, M. Xue, M. C. Coniglio, S. J. Weiss,
F. Kong, T. L. Jensen, B. G. Brown, J. Gao,
K. Brewster, K. W. Thomas, Y. Wang, C. S. Schwartz
and J. J. Levit,
2010:
"Assessing advances in the assimilation of radar data within
a collaborative forecastingresearch environment."
Wea. Forecasting,
25,
15101521.

S. I. Khan, Y. Hong, B. Vieux and W. Liu,
2010:
"Development and evaluation of
an actual evapotranspiration estimation algorithm
using satellite remote sensing and
meteorological observational network in Oklahoma."
International Journal of Remote Sensing,
31
(14),
3799  3819.
DOI: 10.1080/01431161.2010.483487.

S. I. Khan, Y. Hong, J. Wang, K. K. Yilmaz, J. J. Gourley,
R. F. Adler, G. R. Brakenridge, F. Policelli, S. Habib and
D. Irwin,
2010:
"Flood Inundation Mapping from
Remote Sensing and Hydrologic Modeling."
IEEE Trans. Geosci. Remote Sens.,
in press.

K. Kirupakaran, A. B. Cerato, C. Liu, G. A. Miller,
K. K. Muraleetharan, J. D. Pinilla, S. Price
and Z. M. Thompson,
2010:
"Simulation of a Centrifuge Model Test of
Pile Foundations in CDSM Improved Soft Clays.
Proc. GeoFlorida 2010:
GSP 199, Advances in Analysis, Modeling and Design.
West Palm Beach FL,
15831591.

A. K. Kis and J. M. Straka,
2010:
"Nocturnal Tornado Climatology."
Wea. Forecasting,
25,
545.561.
DOI: 10.1175/2009WAF2222294.1.

G. Koller and F. Samadzadeh,
2010:
"Time Bounds on Vertical Partitioning
and Scheduling of Task Graphs."
Technical Report,
OSSM Mentorship Series,
Oklahoma School of Science and Mathematics.

J. M. Kurdzo and R. D. Palmer,
2010:
"A multiband, multimission phased array radar network
in the CONUS."
Proc. AMS Annual Meeting,
Atlanta GA.

J. M. Kurdzo and R. D. Palmer,
2010:
"Optimization of a multiband, multimission phased
array radar network in the USA using a genetic algorithm."
Proc. Sixth European Conference on
Radar in Meteorology and Hydrology,
Sibiu Romania.

J. Kurdzo and R. Palmer,
2010:
"Optimization of a multiband, multimission phased array
radar network using a genetic algorithm."
Proc. AMS Annual Meeting,
Seattle WA.

A. Labryer and P. J. Attar,
2010:
"A Harmonic Balance Approach for
LargeScale Problems in
Nonlinear Structural Dynamics."
Computers and Structures,
88,
(1718),
10021014.
DOI: 10.1016/j.compstruc.2010.06.003.

S. Lakshmivarahan and J. M. Lewis,
2010:
"Forward Sensitivity Based Approach to
Dynamic Data Assimilation."
Advances in Meteorology,
2010,
article ID 375615.
DOI: 1155/2010/375615.

L. L. Lee, M. C. Hara, S. J. Simon, F. S. Ramos,
A. J. Winkle and J.M. Bomont,
2010:
"Crystallization limits of the twoterm
Yukawa potentials based on the entropy criterion."
Journal of Chemical Physics,
132,
074505.

Z. Liao, Y. Hong, J. Wang, H. Fukoka, K. Sassa,
D. Karnawati and F. Fathani,
2010:
"Prototyping an Experimental Early Warning System for
RainfallInduced Landslides in Indonesia
Using Satellite Remote Sensing and Geospatial Datasets."
CL Landslides Journal.
DOI: 10.1007/s1034601002197.

A. McGovern, T. Supinie, D. J. Gagne II, N. Troutman,
M. Collier, R. A. Brown, J. Basara and J. Williams,
2010:
"Understanding Severe Weather Processes through
Spatiotemporal Relational Random Forests."
Proc. NASA Conference on Intelligent Data Understanding:
CIDU
2010
.

D. B. Mechem, Y. L. Kogan and D. Shultz,
2010:
"Large Eddy Observation
of Postfrontal Continental Stratus."
J. Atmos. Sci.,
67,
33683383.

D. B. Mechem, Y. L. Kogan and D. Shultz,
2010:
"Large Eddy Simulations
of Postfrontal Continental Stratus."
J. Atmos. Sci.,
67,
38353853.

B. H. Morrow and A. Striolo,
2010:
"Supported Bimetallic PtAu Nanoparticles:
Structural Features Predicted by
Molecular Dynamics Simulations."
Physical Review B,
81,
155437.

T. D. Nguyen and M. Bagajewicz,
2010:
"Parallel Computing Approaches to
Sensor Network Design Using the Value Paradigm."
Computers and Chemical Engineering,
to appear.

D. S. Oliver, Y. Zhang, H. Phale and Y. Chen,
2010:
"Distributed Parameter and State Estimation in
Petroleum Reservoirs."
Computers & Fluids,
10 Oct 2010.

H. Phale and D. S. Oliver,
2010:
"Data assimilation using
the constrained ensemble Kalman filter."
SPE Journal,
16
(2),
331342.
SPE125101PA.
DOI: 10.2118/125101PA.

T. Prasomsri, R. E. Galiasso Tailleur, W. E. Alvarez,
T. Sooknoi and D. E. Resasco,
2010:
"Conversion of 1 and 2Tetralone Over HY Zeolite."
Catalysis Letters,
135,
226232.

T. Prasomsri, R. E. Galiasso Tailleur, W. E. Alvarez,
T. Sooknoi and D. E. Resasco,
2010:
"Conversion of 1tetralone over HY zeolite:
An indicator of the extent of hydrogen transfer."
Applied Catalysis A,
389,
140146.

T. Prasomsri, D. Shi and D. E. Resasco,
2010:
"Anchoring Pd nanoclusters onto pristine and functionalized
singlewall carbon nanotubes.
A combined DFT and experimental study."
Chemical Physics Letters,
497,
103107.
Featured on the Journal cover.

J. Rufinus,
2010:
"Abinitio calculation of magnetic properties of
Mndoped ZnGeN_{2}."
Journal of Magnetism and Magnetic Materials,
322,
11821184.

J. Rufinus,
2011:
"AbInitio calculation of magnetic properties of
Gddoped ZnGeN_{2}."
Journal of Applied Physics,
109,
07C315.

M. S. Sadik,
2010:
"Outlier Detection for Data Streams."
M.S. thesis (advisor L. Gruenwald),
School of Computer Science,
University of Oklahoma.

M. S. Sadik and L. Gruenwald,
2010:
"DBODDS:
Distance Based Outlier Detection for Data Streams."
Proc. 21st International Conference on
Database and Expert Systems Application (DEXA).

A. Schenkman, M. Xue, A. Shapiro, K. Brewster and J. Gao,
2010:
"Impact of radar data assimilation on
the analysis and prediction of
the 89 May 2007
Oklahoma tornadic mesoscale convective system,
Part I:
Mesoscale features on a 2 km grid."
Mon. Wea. Rev.,
in review.

A. Schenkman, M. Xue, A. Shapiro, K. Brewster and J. Gao,
2010:
"Impact of radar data assimilation on
the analysis and prediction of
the 89 May 2007
Oklahoma tornadic mesoscale convective system,
Part II:
Substormscale mesovortices on a 400 m Grid."
Mon. Wea. Rev.,
139,
224246.

J. K. Shen,
2010:
"Uncovering specific electrostatic interactions
in the denatured states of proteins."
Biophys. J.,
99,
19.

L. Shi, N. R. Tummala and A. Striolo,
2010:
"A Molecular Dynamics Study for C12E6
and SDS Surfactants
at the WaterVacuum Interface."
Langmuir,
26,
54625474.

O. Shieh,
2010:
"The Structure and Evolution of a Supercell in
a Highresolution Hurricane Numerical Simulation."
M.S. thesis
(advisor J. Straka),
School of Meteorology,
University of Oklahoma.

C. Srinivasan and D. V. Papavassiliou,
2010:
"Backwards and forwards dispersion
of a scalar in turbulent wall flows."
Int. J. Heat Mass Transf.,
53,
10231035.

D. Stensrud and J. Gao,
2010:
"Importance of horizontally inhomogeneous
environmental initial conditions to
ensemble stormscale radar data assimilation and
very short range forecasts."
Mon. Wea. Rev.,
138
(4),
12501272.

J. M. Straka and K. M. Kanak,
2010:
"Multimoment microphysical parameterizations
in cloud models."
McGraw Hill (Invited paper).
Accepted and to be published in Dec. 2010.

H. Su and D. S. Oliver,
2010:
"Smart well production optimization using an
ensemblebased method."
SPE Reservoir Evaluation & Engineering,
SPE126072,
accepted and available Online First.

A. J. Suminski, D. C. Tkach, A. H. Fagg and
N. G. Hatsopoulos,
2010:
"Incorporating Feedback from Multiple Sensory Modalities
Enhances BrainMachine Interface Control."
Journal of Neuroscience,
30
(50),
1677716787.

Y. Tachwali, F. Basma, J. Barnes and H. Refai,
2010:
"Wireless Microphone Signal Detection using
a Compressive Sensing Technique for IEEE 802.22."
Proc. 20th Virginia Tech Wireless Symposium,
Blacksburg VA.

E. M. Tromble, R. L. Kolar, K. M. Dresback,
Y. Hong, B. E. Vieux, R. A. Luettich
J. J. Gourley, K. Kelleher and S. Van Cooten,
2010:
"Aspects of Coupled Hydrologic/Hydrodynamic Modeling
for Coastal Flood Inundation."
Estuarine and Coastal Modeling,
Proceedings of the Eleventh International Conference,
M. L. Spaulding (eds.),
American Society of Civil Engineers,
724743.

N. R. Tummala, B. P. Grady and A. Striolo,
2010:
"Lateral Confinement Effects on
the Structural Properties of
Surfactant Aggregates:
SDS on Graphene."
Physical Chemistry Chemical Physics,
12,
1313713143.

N. R. Tummala, B. H. Morrow, D. E. Resasco and A. Striolo,
2010:
"Stabilization of Aqueous Carbon Nanotube
Dispersions using Surfactants:
Insights from Molecular Dynamics Simulations."
ACS Nano,
4,
71937204.

J. A. Wallace and J. K. Shen,
2010:
"Probing the strand orientation and registry alignment in
the propagation of amyloid fibrils of Ab(1622)."
Biochemistry,
49,
52905298.

H. Wang,
2010:
"Parallel Subspace Subcodes of ReedSolomon Codes for
Magnetic Recording Channels."
Ph.D. dissertation
(advisor J. R. Cruz),
School of Electrical & Computing Engineering,
University of Oklahoma.

Y. Wen, Y. Hong, G. Zhang, T. Schuur, J. J. Gourley,
Z. Flamig, K. R. Morris and Q. Cao,
2010:
"Cross Validation of
Spaceborne Radar and Ground Polarimetric Radar
Aided by Polarimetric Echo Classification
of Hydrometeor Types."
AMS Journal of Applied Meteorology and Climatology,
50
(7),
13891402.

M. Xue, F. Kong, K. W. Thomas, J. Gao, Y. Wang,
K. Brewster and K. K. Droegemeier,
2010:
"Prediction of convective storms at convectionresolving
over continental United States with radar data assimilation:
An example case of 26 May 2009."
Geophy. Res. Letters,
submitted.

M. Xue, Y. Jung and G. Zhang,
2010:
"State estimation of convective
storms with a twomoment microphysics scheme
and ensemble Kalman filter:
Experiments with simulated radar data."
Q. J. Roy. Meteor. Soc.,
136,
685700.
DOI: 10.1002/qj.593.

B. Yong, L. Ren, Y. Hong, J. Wang, J. J. Gourley, S. Jiang,
X. Chen and W. Wang,
2010:
"Hydrologic evaluation of
Multisatellite Precipitation Analysis
standard precipitation products in
basins beyond its inclined latitude band:
A case study in Laohahe basin, China."
Water Resour. Res.,
46,
W07542.
DOI: 10.1029/2009WR008965.

Y. Zhang and D. S. Oliver,
2010:
"Evaluation and Error Analysis:
Kalman Gain Regularization versus Covariance Regularization
for EnKF."
Computational Geosciences,
submitted.

Y. Zhang and D. S. Oliver,
2010:
"History matching using a multiscale
stochastic model with the ensemble Kalman filter:
a field case study."
SPE Journal,
accepted.

Y. Zhang and D. S. Oliver,
2010:
"Improving the Kalman gain by bootstrap sampling."
Mathematical Geosciences,
42
(3),
327345.

Y. Zhang, N. Liu and D. S. Oliver,
2010:
"Ensemble filter methods with
perturbed observations applied to nonlinear problems."
Computational Geosciences,
14
(2),
249261.

C. L. Ziegler, E. R. Mansell and E. C. Bruning,
2010:
"Impact of varying CCN concentration on
the precipitation process in a simulated convective storm."
Extended Abstracts,
13th Conference on Cloud Physics,
Portland OR,
American Meteorological Society,
JP3.17.

C. L. Ziegler, E. R. Mansell, J. M. Straka, D. R. MacGorman
and D. W. Burgess,
2010:
"The impact of spatial variations of
ambient lowlevel stability on
the full life cycle of a simulated supercell storm."
Mon. Wea. Rev.,
138,
17381765.
2009
2009 Publications Facilitated by OSCER Rounds/Help Sessions

T. Handy, E. C. Lemley, D. V. Papavassiliou and H. J. Neeman,
2009:
"Loss Coefficients in Microelbows."
Proceedings of FEDSM2009,
ASME Fluids Engineering Division Summer Meeting
,
paper FEDSM200978517.

T. Handy, E. C. Lemley, D. V. Papavassiliou and H. J. Neeman,
2009:
"Laminar Entrance Length in Microtubes."
Proceedings of FEDSM2009,
ASME Fluids Engineering Division Summer Meeting
,
paper FEDSM200978532.

J. S. Kain, S. J. Weiss, D. R. Bright, M. E. Baldwin,
J. J. Levit, G. W. Carbin, C. S. Schwartz, M. Weisman,
K. K. Droegemeier, D. Weber and K. W. Thomas,
2009:
"Some practical considerations for
the first generation of operational convectionallowing NWP:
How much resolution is enough?"
Wea. Forecasting,
23,
931952.

D. Konatham and A. Striolo,
2009:
"Molecular Design of Stable Graphene NanoSheets
Dispersions."
Nano Letters,
8,
4630.

Z. T. Segele, P. J. Lamb and L. M. Leslie,
2009:
"SeasonaltoInterannual Variability of
Ethopia/Horn of Africa Monsoon.
Part I: Associations of
WaveletFiltered LargeScale Atmospheric Circulation and
Global Sea Surface Temperature."
J. Climate,
22,
33963421.

Z. T. Segele, P. J. Lamb and L. M. Leslie,
2009:
"Largescale atmospheric circulation and
global sea surface temperature associations with
Horn of Africa JuneSeptember rainfall."
Int. J. Climatol.,
29,
10751100.

Z. T. Segele, L. M. Leslie and P. J. Lamb,
2009:
"Evaluation and adaptation of
a regional climate model for
the Horn of Africa:
Rainfall climatology and interannual variability."
Int. J. Climatol,
29,
4765.

E. Weng, C. Gao and Y. Luo,
2009:
"Uncertainty Analysis on Forest Carbon Sink Forecast with
Varying Measurement Errors:
A Data Assimilation Analysis."
IOP Conf. Series: Earth and Environmental Science,
6,
302038.
DOI: 10.1088/17551307/6/0/302038.
Other 2009 Publications Facilitated by OU Research IT

D. Argyris, D. R. Cole and A. Striolo,
2009:
"Dynamic Behavior of Interfacial Water
at the Silica Surface."
Journal of Physical Chemistry C,
113,
1959119600.

D. Argyris, D. R. Cole and A. Striolo,
2009:
"Hydration Structure on Silica Crystalline Substrates."
Langmuir,
25,
80258035.

P. J. Attar, R. E. Gordnier, J. W. Johnston,
W. A. Romberg and R. N. Parthasarathy,
2009:
"Aeroelastic Analysis of Membrane Micro Air Vehicles."
Proceedings of the ASME 2009 Fluids Engineering
Division Summer Meeting,
Vale CO USA.

P. J. Attar, D. Tang and E. H. Dowell,
2009:
"Nonlinear Aeroelastic Study for Folding Wing Structures."
Proc. NATORTA Symposium on Morphing Wings,
Evora Portugal,
MPAVT16810.

P. J. Attar and R. E. Gordnier,
2009:
"High Fidelity Computational Aeroelastic
Analysis of a Plunging Membrane Airfoil."
Proc. 50th AIAA Structures, Structural Dynamics and
Materials Conference,
Palm Springs CA.

P. J. Attar and P. Vedula,
2009:
"Direct Quadrature Method of Moments Solution of
the FokkerPlanck Equation for
Stochastic Processes in Aeroelasticity."
AIAA Journal,
47
(5),
12191227,
DOI: 10.2514/1.40292.

K. K. Beasley, L. M. Gieg, J. M. Suflita and M. A. Nanny,
2009:
"Polarizability and Spin Density Correlate with the
Relative Anaerobic Biodegradability of Alkylaromatic
Hydrocarbons."
Environmental Science and Technology,
43,
49955000.
DOI: 10.1021/es9003558.

K. Beatty, E. N. Rasmussen, J. M. Straka and L. Lemon,
2009:
"The supercell spectrum.
Part II:
A semiobjective method for
radar classification of supercell type."
Electronic J. Severe Storms Meteor.,
4,
130.

W. Chang and J. R. Cruz,
2009:
"Optimal Channel Detection for
Nonbinary Coded Partial Response Channels."
IEEE Transactions on Communications,
57
(7),
18921895.

Y. Chen, D. S. Oliver and D. Zhang,
2009:
"Data assimilation for nonlinear problems by
ensemble Kalman filter with reparameterization."
J. Petrol. Science and Engineering,
66
(12),
114.

Y. Chen, D. S. Oliver and D. Zhang,
2009:
"Efficient ensemblebased
closedloop production optimization."
SPE Journal,
14
(4),
634645.

D. Dawson,
2009:
"The impact of single and multimoment microphysics on
numerical simulations of supercells and tornadoes of
the Oklahoma tornadic storms of 3 May 1999."
Ph.D. dissertation
(advisor M. Xue),
School of Meteorology,
University of Oklahoma.

P. A. DiazGomez and D. F. Hougen,
2009:
"Three Interconnected Parameters for Genetic Algorithms."
Genetic and Evolutionary Computation Conference,
763770.

P. A. DiazGomez and D. F. Hougen,
2009:
"Initial Population Diversity and Performance Independence."
International Conference on Artificial
Intelligence and Pattern Recognition,
6 pages (unnumbered).

B. Eskridge,
2009:
"Effects of State and Action Abstraction on Development of
Controllers for Concurrent, Interfering, NonEpisodic Tasks."
Ph.D. dissertation
(advisor D. Hougen),
School of Computer Science,
University of Oklahoma.

B. E. Eskridge and D. F. Hougen,
2009:
"Using State and Action Abstraction in Controllers for
Concurrent, Interfering, Nonepisodic Tasks."
Autonomous Agents,
V. Kordic, ed.,
ITech Education and Publishing,
ISBN 9789533070896.

B. E. Eskridge and D. F. Hougen,
2009:
"Using Action Abstraction to Evolve Effective Controllers."
Proc. Genetic and Evolutionary Computation Conference,
17731774.

A. O. Fierro, R. Rogers, F. Marks and D. Nolan,
2009:
"Impact of horizontal grid spacing on
simulated tropical cyclone
microphysical and kinematic fields."
Monthly Weather Review,
137,
37173743.

A. O. Fierro, J. Simpson, M. A. LeMone, J. M. Straka and
B. F. Smull,
2009:
"On How Hot Towers Fuel the Hadley Cell:
An Observational and modeling study of
lineorganized convection in the Equatorial Trough from
TOGA COARE."
Journal of Atmospheric Sciences,
66
(9)
27302746.

J. Frame, P. Markowski, Y. Richardson, J. Straka and
J. Wurman,
2009:
"Polarimetric and DualDoppler Radar Observations of
the Lipscomb County, Texas, Supercell Thunderstorm on
23 May 2002."
Mon. Wea. Rev.,
137,
544561.

R. E. Gordnier and P. J. Attar,
2009:
"Implicit LES Simulations of
a Low Reynolds Number Flexible Membrane Wing Airfoil."
Proc. 47th AIAA Aerospace Sciences Meeting,
Orlando FL,
AIAA paper 2009579.

J. J. Gourley, S. E. Giangrande, Y. Hong, Z. L. Flamig,
T. Schuur and J. A. Vrugt,
2009:
"Impacts of Polarimetric Radar Observations on
Hydrologic Simulation."
Journal of Hydrometeorology,
11,
781796.

J. Gourley, Y. Hong, Z. Flamig, L. Li and J. Wang,
2009:
"Intercomparison of Rainfall Estimates from
Radar, Satellite, Gauge, and Combinations
for a Season of Record Rainfall."
J. Appl. Meteor. Climatol.,
49,
437452
(special issue on IPWG Remote Sensing Precipitation).

L. A. Heflin, C. B. Street, D. V. Papavassiliou, D. C. Kem,
D. H. Wu and E. A. O'Rear,
2009:
"Transient Stenoticlike Occlusions as
a Possible Mechanism for Renovascular Hypertension
Due to Aneurysm."
Journal of American Society of Hypertension,
3
(3),
192200.

Y. Jung, M. Xue and G. Zhang,
2009:
"Polarimetric radar signatures of a simulated supercell storm
using a twomoment microphysics scheme and
polarimetric radar emulator."
J. Appl. Meteor. Climatol..
DOI: 10.1175/2009JAMC2178.1.

K. M. Kanak and J. M. Straka,
2009:
"Numerical simulations of mammatus clouds in shear."
Atmos. Sci. Letters.,
10,
226232.
DOI: 10.1002/asl.224.

A. K. Kis,
2009:
"Some Challenges in Tornadogenesis Research."
M.S. thesis
(advisor J. Straka),
School of Meteorology,
University of Oklahoma.

Y. L. Kogan, Z. N. Kogan and D. B. Mechem,
2009:
"Fidelity of Analytic Drop Size Distributions in
Drizzling Stratiform Clouds Based on LargeEddy Simulations."
J. Atmos. Sci,
66,
23352348.

D. Konatham and A. Striolo,
2009:
"Thermal Boundary Resistance at the GrapheneOil Interface."
Applied Physics Letters,
95,
163105.

Phuong M. Le,
2009:
"Turbulent heat transport in
plane channel and plane Couette flow
using a direct numerical simulation
in conjunction with Lagrangian scalar tracking."
Ph.D. dissertation,
School of Chemical, Biological & Materials Engineering,
University of Oklahoma.

P. M. Le and D. V. Papavassiliou,
2009:
"A physical picture of the mechanism of
turbulent heat transfer from the wall."
Int. J. Heat Mass Transf.,
52
(2122),
48734882.

L. Li, Y. Hong, J. Wang, R. Adler, F. Policelli, S. Habib,
D. Irwin, T. Korme and L. Okello,
2009:
"Evaluation of
the Realtime TRMMbased Multisatellite
Precipitation Analysis for
an Operational Flood Prediction System in
Nzoia Basin, Lake Victoria, Africa."
Journal of Natural Hazards,
50,
(1),
109123.
DOI 10.1007/s1106900893245.

A. E. Mercer, C. M. Shafer, C. A. Doswell, M. B. Richman
and L. M. Leslie,
2009:
"Objective classification of tornadic and nontornadic
severe weather outbreaks."
Mon. Wea. Rev.,
137,
43554368.
(Featured in the "Papers of Note" section of the
Bulletin of the American Meteorological Society.)

B. H. Morrow and A. Striolo,
2009:
"Assessing How MetalCarbon Interactions Affect the
Structure of Supported Platinum Nanoparticles."
Molecular Simulation,
35,
795803.

V. A. Nascimento, L. L. Caliri, A. Schwettmann,
J. P. Shaffer and L. G. Marcassa,
2009:
"Electric Field Effects in the Excitation of
Cold RydbergAtom Pairs."
Phys. Rev. Lett.,
102,
213201.

D. S. Oliver and Y. Chen,
2009:
"Improved initial sampling for the ensemble Kalman filter."
Computational Geosciences,
13
(1),
1326.

K. R. Overstreet, A. Schwettmann, J. Tallant, D. Booth
and J. P. Shaffer,
2009:
"Observation of electricfieldinduced
Cs Rydberg atom macrodimers."
Nature Physics,
5,
581  585.

C. K. Potvin, A. Shapiro, T.Y. Yu, J. Gao and M. Xue,
2009:
"Using a loworder model to characterize and detect
tornadoes in multipleDoppler radar data."
Mon. Wea. Rev.,
137,
12301249.

D. Ren, J. Wang, R. Fu, D. Karoly, Y. Hong, L. Leslie,
C. Fu and G. Huang,
2009:
"Mudslidecaused ecosystem degradation
following Wenchuan earthquake 2008."
Geophysical Research Letters,
36,
L05401.
DOI: 10.1029/2008GL036702.

J. Rufinus,
2009:
"The magnetic properties of (Cr,V)doped ZnGeN_{2}."
J. Phys. Conf. Series,
200,
6.
DOI: 10.1088/17426596/200/6/062022.

J. Rufinus,
2009:
"Magnetic Properties of Mdoped
(M = Mn, Cr, or V) ZnSiN2."
J. Appl. Phys.,
105,
07C509.

J. Rufinus,
2009:
"The magnetic properties of (Mn, Cr, V)doped
MgSiN_{2}."
Journal of Applied Physics,
105
(7),
07C509  07C5093.

J. Snow,
2009:
"Distributed Monte Carlo Production for D0."
Proc. International Conference on Computing in
High Energy and Nuclear Physics,
Prague, Czech Republic.

N. B. Spencer, L. L. Lee, R. N. Parthasarathy
and D. V. Papavassiliou,
2009:
"Turbulence structure close to the wall for
plane PoiseuilleCouette flow."
The Canadian Journal of Chemical Engineering,
87
(1),
3846.

J. M. Straka,
2009:
Cloud and Precipitation Microphysics:
Principles and Parameterizations.
Cambridge University Press,
Cambridge,
406pp.

Y. Tachwali, J. Barnes, F. Basma and H. Refai,
2009:
"The Feasibility of Fast Fourier Sampling Technique
for Wireless Microphone Detection in
IEEE 802.22 Air Interface."
Proc. IEEE Infocom Work In Progress Workshop 2009.

N. R. Tummala and A. Striolo,
2009:
"Curvature Effects on the Adsorption of Aqueous SDS
Surfactants on Carbonaceous Substrates:
Structural Features and Counterion Dynamics."
Physical Review E,
80,
021408.
Also featured in
Virtual Journal of Nanoscale Science & Technology,
20
(11),
Sep 14 2009.

N. R. Tummala and A. Striolo,
2009:
"SDS Surfactants on Carbon Nanotubes: Aggregate Morphology."
ACS Nano 3,
595602.

J. Wang, Y. Hong, J. Gourley, P. Adhikari, L. Li and F. Su,
2009:
"Quantitative Assessment of Climate Change and
Human Impact on Longterm Hydrologic Response
using an Impact Factor Formula:
A Case Study in a Subbasin of the Yellow River, China."
International Journal of Climatology,
Special Issue Hydroclimatology.
DOI: 10.1002/joc.2023.

Q. Wang and M. Xue,
2009:
"A highresolution modeling study of convective initiation
on 19 June 2002 during IHOP.
Part I:
Results of control data assimilation experiment."
23nd Conf. Wea. Anal. Forecasting/19th
Conf. Num. Wea. Pred.,
Omaha NE,
Amer. Meteor. Soc.,
Paper 12A.3.

J. A. Wallace and J. K. Shen,
2009:
"Predicting protein pKa's with continuous
constant pH molecular dynamics."
Methods Enzymol.,
466,
455475.

Q. Xu, L. Wei and S. Healy,
2009:
"Measuring information content from observations
for data assimilation:
Connection between different measures and application to
radar scan design."
Tellus Series A,
61,
144153.

M. Xue, F. Kong, K. W. Thomas, J. Gao, Y. Wang, K. Brewster,
K. K. Droegemeier, X. Wang, J. Kain, S. Weiss, D. Bright,
M. Coniglio and J. Du,
2009:
"CAPS realtime multimodel convectionallowing ensemble
and 1km convectionresolving forecasts for
the NOAA Hazardous Weather Testbed 2009 Spring Experiment."
23nd Conf. Wea. Anal. Forecasting/19th
Conf. Num. Wea. Pred.,
Omaha NE,
Amer. Meteor. Soc.,
Paper 16A.2.

M. Xue, M. Tong and G. Zhang,
2009:
"Simultaneous state estimation and attenuation correction
for thunderstorms with radar data using an
ensemble Kalman filter:
Tests with simulated data."
Quart. J. Royal Meteor. Soc.,
135,
14091423.

W. T. C. Yuh, N. A. Mayr, D. Jarjoura, D. H. Wu,
J. C. Grecula, S. S. Lo, S. M. Edwards, V. A. Magnotta,
S. Sammet, H. Zhang, J. F. Montebello, J. M. Fowler,
M. V. Knopp and J. Z. Wang,
2009:
"Predicting Control of Primary Tumor and Survival by
DCE and Volumetric MRI During Early Therapy in
Cervical Cancer."
Invest. Radiol.,
44
(6),
34350.

K. Zhao and M. Xue,
2009:
"Assimilation of coastal Doppler radar data with
the ARPS 3DVAR and cloud analysis
for the prediction of Hurricane Ike (2008)."
Geophy. Res. Letters,
36,
L12803.
DOI: 10.1029/2009GL038658.

C. Zhong and J. R. Cruz,
2009:
"SymbolBased Belief Propagation
Decoding of ReedSolomon Codes."
Proc. IEEE Vehicular Technology Conference,
(Barcelona, Spain),
2009@IEEE.
DOI: 10.1109/VETECS.2009.5073872.
2008
2008 Publications Facilitated by OSCER Rounds/Help Sessions

D. Argyris, N. R. Tummala, A. Striolo and D. R. Cole,
2008:
"Molecular Structure and Dynamics in Thin Water Films
at the Silica and Graphite Surfaces."
Journal of Physical Chemistry C,
112
(35),
1358713599
(cover
article).

D. Argyris, N. R. Tummala, A. Striolo and D. R. Cole,
2008:
"Molecular Structure and Dynamics in
Thin Water Films at the Silica and Graphite Surfaces."
J. Phys. Chem. C,
112
(35),
13587.

K. A. Brewster, J. Brotzge, K. W. Thomas, Y. Wang, M. Xue,
J. Gao, D. Weber and K. Howe,
2008:
"High resolution assimilation of CASA and NEXRAD radar data
in nearreal time:
Results from Spring 2007 and plans for Spring of 2008."
12th Conf. IOASAOLS,
New Orleans LA,
Amer. Meteor. Soc.

N. Dahl,
2008:
"AIRS Version 5 Data Assimilation into ARPS
as a Tool for Improving
ShortRange ConvectionResolving
Numerical Weather Prediction."
M.S. thesis,
School of Meteorology,
University of Oklahoma.

M. R. Dougherty, A. FrancoWatkins and R. P. Thomas,
2008:
"The psychological plausibility of
fast and frugal heuristics."
Psychological Review,
115
(1),
199211.

M. R. Dougherty, R. P. Thomas, and A. FrancoWatkins,
2008:
"Postscript: Vague heuristics revisited."
Psychological Review,
115
(1),
211213.

A. O. Fierro, L. M. Leslie, E. R. Mansell and J. M. Straka,
2008:
"Numerical Simulations of the
Microphysics and Electrification of the
Weakly Electrified 9 February 1993 TOGA COARE Squall Line:
Comparisons with Observations."
Monthly Weather Review,
136
(1)
(January 2008),
364379.

Z. Guo,
2008:
"Ab Initio Folding of Small Peptides with
Recently Developed Molecular Dynamics Simulation Protocol."
Ph.D. dissertation,
Department of Chemistry & Biochemistry,
University of Oklahoma.

T. A. Handy, E. C. Lemley, D. V. Papavassiliou and
H. J. Neeman,
2008:
"Simulations to Determine Laminar Loss Coefficients for
Flow in Circular Ducts with
Arbitrary Planar Bifurcation Geometries."
Proceedings of FEDSM2008,
6th ASME Fluids Engineering Summer Conference,
paper FEDSM200855181.

B. H. Morrow and A. Striolo,
2008:
"Platinum Nanoparticles on Carbonaceous Materials:
Effect of Support Geometry on
Nanoparticle Mobility, Morphology, and Melting."
Nanotechnology,
19,
195711.

H. Neeman, H. Severini, D. Wu,
2008:
"Supercomputing in Plain English:
Teaching Cyberinfrastructure to Computing Novices."
inroads: SIGCSE Bulletin,
40
(2),
2730.

H. Neeman, H. Severini, D. Wu and K. Kantardjieff,
2008:
"Teaching Supercomputing via Videoconferencing."
Proceedings of TeraGrid 2008.
Best Education Paper award.

K. L. Nemunaitis and J. B. Basara,
2008:
"The structure of the convective
boundary layer in and around Oklahoma City."
Preprints,
Proc. 22nd Conf. on Hydrology,
New Orleans LA,
Amer. Meteor. Soc.,
CDROM J1.5.

A. D. Schenkman,
2008:
"High resolution assimilation of CASA and WSR88D for
the prediction of a tornadic convective system."
M.S. thesis (advisor A. Shapiro),
School of Meteorology,
University of Oklahoma.

A. D. Schenkman, A. M. Shapiro, K. Brewster, M. Xue,
J. Gao and N. Snook,
2008:
"High resolution assimilation of CASA radar data
from a tornadic convective system."
Symp. Recent Develop. Atmos. Applications Radar Lidar,
New Orleans LA,
Amer. Meteor. Soc.

H. Severini, H. Neeman, C. Franklin, J. Alexander
and Sumanth J. V.,
2008:
"Implementing LinuxFacilitated Condor
in Windows Computer Labs."
Proceedings of the 2008 Nuclear Science Symposium.

A. Striolo,
2008:
"On the Solution SelfAssembly of Colloidal Brushes:
Insights from Simulations."
Nanotechnology,
19,
445606.

M. Subotic,
2008:
"Flows between concentric rotating cylinders
with a porous lining."
Ph.D. dissertation,
School of Aerospace & Mechanical Engineering,
University of Oklahoma.

R. P. Thomas, M. R. P. Dougherty, A. Sprenger
and I. Harbison,
2008:
"Diagnostic hypothesis generation and human judgment."
Psychological Review,
115
(1),
155185.

N. R. Tummala and A. Striolo,
2008:
"HydrogenBond Dynamics for Water
Confined in Carbon Tetrachloride&Acetone Mixtures."
J. Phys. Chem. B,
112
(34),
1067510683.

N. R. Tummala and A. Striolo,
2008:
"Role of CounterIon Condensation in
the SelfAssembly of SDS Surfactants at
the WaterGraphite Interface."
J. Phys. Chem. B,
112
(7),
19872000.

R. S. Voronov, D. V. Papavassiliou and L. L. Lee,
2008:
"Review
of Fluid Slip over Superhydrophobic Surfaces
and Its Dependence on the Contact Angle."
Ind. Eng. Chem. Res.,
47
(8),
24552477.
10.1021/ie0712941.

Y. Xu and P. Vedula,
2008:
"A Quadrature Based Method of Moments for Nonlinear
Filtering."
AIAA 20086602,
Proc. AIAA/AAS Astrodynamics Specialist Conference and
Exhibit,
Honolulu HI.
Other 2008 Publications Facilitated by OU Research IT

C. Agbalaka and D. S. Oliver,
2008:
"Application of the EnKF and localization to
automatic history matching of
facies distribution and production data."
Mathematical Geosciences,
40
(4),
353374.

P. J. Attar,
2008:
"Some Results for Approximate Strain and Rotation Tensor
Formulations in Geometrically Nonlinear ReissnerMindlin
Plate Theory."
International Journal of Nonlinear Mechanics,
43
(2),
8199.

P. J. Attar, R. E. Gordnier and M. R. Visbal,
2008:
"Numerical Simulation of the Buffet of
a Full Span Delta Wing at High Angle of Attack."
Journal of Aircraft,
45
(3),
857867.

P. Attar and P. Vedula,
2008:
"Direct quadrature method of moments solution of the
FokkerPlanck equation."
Journal of Sound and Vibration,
317
(12),
265272.

P. J. Attar and P. Vedula,
2008:
"Direct Quadrature Method of Moments Solution of
the FokkerPlanck Equation for
Stochastic Processes in Aeroelasticity."
AIAA20081986,
Proc. 49th AIAA/ASME/ASCE/AHS/ASC Structures,
Structural Dynamics, and Materials Conference
and
10th AIAA NonDeterministic Approaches Conference,
Schaumburg IL.

W. Chang and J. R. Cruz,
2008:
"Performance and Decoding Complexity of
Nonbinary LDPC Codes for Magnetic Recording."
IEEE Transactions on Magnetics,
44
(1),
211216.

W. Chang and J. R. Cruz,
2008:
"Nonbinary LDPC Codes for 4KByte Sectors."
Digests IEEE International Magnetics Conference,
Madrid Spain,
HM12.

W. Chang and J. R. Cruz,
2008:
"Comments on
'Performance and Decoding Complexity of
Nonbinary LDPC Codes for Magnetic Recording.'"
IEEE Transactions on Magnetics,
44
(10),
24232424.

D. Corrao,
2008:
"The role of dataset selection in model verification and
cloud parameterization development."
M.S. thesis
(advisor Y. L. Kogan),
School of Meteorology,
University of Oklahoma.

D. T. Dawson II,
2008:
"High resolution realdata simulations of
the 3 May 1999 tornadic storms with
multimoment microphysics."
Proc. 24th Conference on Severe Local Storms,
American Meteorological Society,
Savannah GA,
14.7.

D. T. Dawson II, M. Xue and J. A. Milbrandt,
2008:
"Improvements in the treatment of evaporation and melting in
multimoment versus singlemoment bulk microphysics:
results from numerical simulations of
the 3 May 1999 Oklahoma tornadic storms."
24th Conference on Severe Local Storms,
American Meteorological Society,
Savannah GA,
17B.4.

J. Gao and M. Xue,
2008:
"An efficient dualresolution approach for
ensemble data assimilation and tests with
assimilated Doppler radar data."
Mon. Wea. Rev.,
136,
945963.

J. Gao, K. Brewster and M. Xue,
2008:
"Sensitivity of radio reflectivity to
moisture and temperature
and its influence on radar ray path."
Adv. Atmos. Sci.,
25,
10981106.

M. S. Gilmore and J. M. Straka,
2008:
"The Berry and Reinhart 1974 autoconversion scheme:
A digest."
J. Appl. Meteor.,
47,
375396.

Y. Jung,
2008:
"State and parameter estimation using
polarimetric radar data and an ensemble Kalman filter."
Ph.D. dissertation
(advisor M. Xue),
School of Meteorology,
University of Oklahoma.

Y. Jung, G. Zhang and M. Xue,
2008:
"Assimilation of simulated polarimetric radar data for
a convective storm using ensemble Kalman filter.
Part I:
Observation operators for
reflectivity and polarimetric variables."
Mon. Wea. Rev.,
136,
22282245.

Y. Jung, M. Xue, G. Zhang and J. Straka,
2008:
"Assimilation of simulated polarimetric radar data for
a convective storm using ensemble Kalman filter.
Part II:
Impact of polarimetric data on storm analysis.
Mon. Wea. Rev.,
136,
22462260.

K. M. Kanak, J. M. Straka and D. M. Schultz,
2008:
"Numerical simulations of mammatus clouds."
J. Atmos. Sci,
65,
16061621.

T. Lei, M. Xue, T. Yu and M. Teshiba,
2008:
"Impact of spatial oversampling by phasedarray radar on
convectivestorm analysis using
ensemble Kalman filter and simulated data."
Proc. Symp. Recent Develop. Atmos.
Applications Radar Lidar,
New Orleans LA,
Amer. Meteor. Soc.,
P2.17.

A. M. Loftus, D. B. Weber and C. A. Doswell III,
2008:
"Parameterized Mesoscale Forcing for
Initiating NumericallySimulated
Isolated Multicellular Convection."
Mon. Wea. Rev.,
136,
24082421.

A. McGovern, N. Hiers, M. Collier, D. J. Gagne II
and R. A. Brown,
2008:
"Spatiotemporal Relational Probability Trees."
Proc.
2008 IEEE International Conference on Data Mining,
Pisa, Italy,
935940.

D. B. Mechem and Y. L. Kogan,
2008:
"A bulk parameterization of Giant CCN."
J. Atmos. Sci,
65,
24582466.

D. B. Mechem, Y. L. Kogan, M. Ovtchinnikov, A. B. Davis,
K. F. Evans and R. G. Ellingson,
2008:
"Multidimensional longwave forcing of
boundary layer cloud systems."
J. Atmos. Sci.,
65,
39633977.

A. Mercer,
2008:
"Discrimination of Tornadic and NonTornadic
Severe Weather Outbreaks."
Ph.D. dissertation
(advisor M. Richman),
School of Meterology,
University of Oklahoma.

D. S. Oliver and Y. Chen,
2008:
"Improved initial sampling for the ensemble Kalman filter."
Computational Geosciences,
12,
accepted,
doi 10.1007/s1059600891012.

B. Roostaei, K. J. Mullen, H. A. Fertig and S. H. Simon,
2008:
"Theory
of Activated Transport in
Bilayer Quantum Hall Systems."
Phys. Rev. Lett.
101,
046804.

J. Rufinus,
2008:
"AbInitio Study of Transition
temperature of MnDoped GaN Diluted Magnetic
Semiconductor."
Proc. Appl. Math. and Mech.,
7
(1),
21100032110004.

J. Rufinus and J. DeWinter,
2008:
"Magnetic Properties of MnDoped Chalcopyrites:
(BeSn, BeGe, MgGe)N2."
J. Appl. Phys.,
103,
07D109.

A. Shapiro, C. K. Potvin and J. Gao,
2009:
"Use of a vertical vorticity equation in
variational dualDoppler wind analysis."
J. Atmos. Oceanic Technol.,
26,
20892106.

N. Snook and M. Xue,
2008:
"Effects of microphysical drop size distribution on
tornadogenesis in supercell thunderstorms."
Geophy. Res. Letters,
35,
L24803.
DOI: 10.1029/2008GL035866.

L. Striz,
2008:
"A New Method for Solving
the Collisional Boltzmann Equation on a Lattice:
With Applications to Nonequilibrium Flows."
M.S. thesis
(directed by P. Vedula),
School of Aerospace & Mechanical Engineering,
University of Oklahoma.

R. L. Tanamachi, W. Feltz and M. Xue,
2008:
"Observations and numerical simulation of
upper boundary layer rapid drying and moistening events
during the International H2O Project (IHOP_2002)."
Mon. Wea. Rev.,
136
(8),
31063120.

M. Van Den Broeke, J. M. Straka and E. N. Rasmussen,
2008:
"Polarimetric radar observations at lowlevels
during tornado life cycles in
a small sample of classic Southern Plains supercells."
J. Appl. Meteor. Climatology,
47,
12321247.

H. Wang, W. Chang and J. R. Cruz,
2008:
"Performance of a ChaseType Decoding Algorithm for
ReedSolomon Codes on
Perpendicular Magnetic Recording Channels."
Journal of Magnetism and Magnetic Materials,
320,
31243127.

D. H. Wu, A. D. Smith, D. M. Thompson, Z. Yang, V. Magnotta,
R. Alam, J. Suri, W. T. Yuh and N. A. Mayr,
2008:
"Iterative Active Deformational Methodology for
Tumor Delineation:
Evaluation across Radiation Treatment Stage and Volume."
J. Magn. Reson. Imaging,
28,
11881194.
PMC2720022.

H. Xia, H. Wang and J. R. Cruz,
2008:
"A ChaseGMD Algorithm for SoftDecision Decoding of
ReedSolomon Codes on Perpendicular Recording Channels."
Proc. IEEE International Conference on Communications,
Beijing China,
19771981.

Q. Xu, L. Wei, H. Lu, C. Qiu and Q. Zhao,
2008:
"Timeexpanded sampling for ensemblebased filters:
Assimilation experiments with
a shallowwater equation model."
J. Geophys. Res.,
113,
D02114,
DOI: 10.1029/2007JD008624.

Q. Xu, H. Lu, S. Gao, M. Xue and M. Tong,
2008:
"TimeExpanded Sampling for Ensemble Kalman Filter:
Assimilation Experiments with Simulated Radar Observations."
Monthly Weather Review,
136
(7),
26512667.
DOI: 10.1175/2007MWR2185.1.

L. Yi, Y. L. Kogan and D. B. Mechem,
2008:
"An idealized modeling study of the effect of
continental air mass aerosol parameters on
marine stratocumulus."
J. Atmos. Res,
88,
157167.
2007
2007 Publications Facilitated by OSCER Rounds/Help Sessions

R. Abraham and T. S. Ibrahim,
"Proposed Radiofrequency PhasedArray Excitation Scheme
Homogenous and Localized 7 Tesla WholeBody Imaging
Based on FullWave Numerical Simulations."
Magnetic Resonance In Medicine,
57
(2),
236243.
COMMUNICATION:
Opening Article of the February 2007 Issue.

A. Fierro,
2007:
"Highresolution simulations of the electrification and
lightning in an idealized hurricanelike vortex
over ocean and at landfall."
Ph.D. dissertation
(advisor L. Leslie),
School of Meteorology,
University of Oklahoma.

A. O. Fierro, L. M. Leslie, E. R. Mansell and J. M. Straka,
2007:
"Highresolution simulations of the microphysics and
electrification in a hurricanelike vortex and
in a TOGA COARE oceanic squall line."
Preprint,
13th International Conference on Atmospheric
Electricity,
Beijing China,
August 1319.
Commission of the International Association of
Meteorology and Atmospheric Physics.

A. Fierro, L. Leslie, E. Mansell, J. Straka, D. MacGorman
and C. Ziegler,
2007:
"A Highresolution Simulation of the Microphysics and
Electrification in an Idealized Hurricanelike Vortex."
Meteorology and Atmospheric Physics,
Springer,
98,
1333.
DOI 10.1007/s0070300602370.

Y. L. Kogan, Z. N. Kogan and D. B. Mechem,
2007:
"Assessing the errors of microphysical retrievals in
marine stratocumulus based on Doppler radar parameters."
J. Hydrometeorol.,
GEWEX special issue,
8,
665677.

F. Kong, K. K. Droegemeier and N. L. Hickmon,
2007:
"Multiresolution Ensemble Forecasts of
an Observed Tornadic Thunderstorm System.
Part II: Stormscale Experiments."
Mon. Wea. Rev.,
135,
759782.

E. C. Lemley, D. V. Papavassiliou and H. J. Neeman,
2007:
"NonDarcy Flow Pore Network Simulation:
Development and Validation of a 3D Model."
Proceedings of FEDSM2007,
5th Joint ASME/JSME Fluids Engineering Conference,
paper FEDSM200737278.

E. C. Lemley, D. V. Papavassiliou and H. J. Neeman,
2007:
"Simulations to Determine Laminar Loss Coefficients in
Arbitrary Planar Dividing Flow Geometries."
Proceedings of FEDSM2007,
5th Joint ASME/JSME Fluids Engineering Conference,
paper FEDSM200737268.

B. H. Morrow and A. Striolo,
2007:
"Morphology and Diffusion Mechanism of
Platinum Nanoparticles Supported on
Carbon Nanotube Bundles."
Journal of Physical Chemistry C,
111,
17905.

K. R. Overstreet, A. Schwettmann, J. Tallant and
J. P. Shaffer,
2007:
"Photoinitiated collisions between
cold Cs Rydberg atoms."
Phys. Rev. A,
76,
011403(R).

A. Schwettmann, K. R. Overstreet, J. Tallant and
J. P. Shaffer,
2007:
"Analysis
of longrange Cs Rydberg potential wells."
J. Modern Opt.,
54,
25512562.

A. Striolo,
2007:
"Controlled Assembly of Spherical Nanoparticles:
Nanowires and Spherulites."
Small,
3,
628.

A. Striolo,
2007:
"Water Self Diffusion Through
Narrow Oxygenated Carbon Nanotubes."
Nanotechnology,
18,
475704.

N. R. Tummala and A. Striolo,
2007:
"Role of CounterIon Condensation on
the SelfAssembly of SDS Surfactants
at the WaterGraphite Interface."
Journal of Physical Chemistry B,
112,
1987.

R. Voronov, D. Papavassiliou and L. Lee,
2007:
"Slip Length and Contact Angle Over Hydrophobic Surfaces."
Chemical Physics Letters,
441
(46),
273276.
DOI: 10.1016/j.cplett.2007.05.013.
Other 2007 Publications Facilitated by OU Research IT

P. J. Attar and R. E. Gordnier,
2007:
"Aeroelastic Modeling Using A Geometrically Nonlinear
Pversion Mixed ReissnerMindlin Plate Element."
Proceedings of the 48th AIAA/ASME/ASCE/AHS/ASC
Structures, Structural Dynamics, and Materials
Conference,
paper AIAA20072318.

K. A. Brewster, K. W. Thomas, J. Brotzge, Y. Wang,
D. Weber and M. Xue,
2007:
"High Resolution Assimilation of CASA XBand and
NEXRAD Radar Data for Thunderstorm Forecasting."
Proceedings of the
22nd Conference on Weather Analysis and
Forecasting/18th Conference on Numerical Weather
Prediction,
American Meteorological Society,
CDROM 1B.1.

W. Chang and J. R. Cruz,
2007:
"Performance and Decoding Complexity of
Nonbinary LDPC Codes for Magnetic Recording."
Digests IEEE 18th Magnetic Recording Conference,
Minneapolis MN, invited,
7273.

K. Chen,
2007:
"Assembly job shop scheduling problems with
component availability constraints."
Ph.D. Dissertation,
School of Industrial Engineering,
University of Oklahoma.

K. Chen, S. Moses, S. Pulat,
2007:
"Material Assignment Models for BuildToOrder Environments."
European Journal of Industrial Engineering.

D. T. Dawson II, M. Xue, J. A. Milbrandt, M. K. Yau and
G. Zhang,
2007:
"Impact of multimoment microphysics and model resolution on
predicted cold pool and reflectivity intensity and structures
in the Oklahoma tornadic storms of 3 May 1999."
22nd Conf. Wea. Anal. Forecasting/18th Conf.
Num. Wea. Pred.,
Salt Lake City UT,
Amer. Meteor. Soc.,
CDROM 10B.2.

P. DiazGomez,
2007:
"Optimization of Parameters for
Binary Genetic Algorithms."
Ph.D. dissertation
(advisor D. Hougen),
School of Computer Science,
University of Oklahoma.

J. Dong, M. Xue and K. Droegemeier,
2007:
"The impact of highresolution surface observations on
convective storm analysis with ensemble Kalman filter."
22nd Conf. Wea. Anal. Forecasting/18th Conf.
Num. Wea. Pred.,
Salt Lake City UT,
Amer. Meteor. Soc.,
CDROM P1.42.

Z. Dufran,
2007:
"Parameter Range Study of
NumericallySimulated Isolated Multicellular Convection."
M.S. thesis,
School of Meteorology,
University of Oklahoma.

B. E. Eskridge and D. F. Hougen,
2007:
"Using Priorities to Simplify Behavior Coordination."
In
International Joint Conference on Autonomous
Agents and Multiagent Systems,
ACM,
13341336.

Y. Gu and D. S. Oliver,
2007:
"An iterative ensemble Kalman filter for
multiphase fluid flow data assimilation."
SPE Journal,
12
(4),
438446.

T. Lei, M. Xue, T. Yu and M. Teshiba,
2007:
"Study on the optimal scanning strategies of
phasearray radar through ensemble Kalman filter assimilation
of simulated data."
Proc. 33rd Int. Conf. Radar Meteor.,
Cairns,
Australia,
Amer. Meteor. Soc.,
CDROM P7.1.

F. Kong, M. Xue, K. K. Droegemeier, D. Bright,
M. C. Coniglio, K. W. Thomas, Y. Wang, D. Weber,
J. S. Kain, S. J. Weiss and J. Du,
2007:
"Preliminary analysis on
the realtime stormscale ensemble forecasts
produced as a part of
the NOAA hazardous weather testbed 2007 spring experiment."
22nd Conf. Wea. Anal. Forecasting/18th
Conf. Num. Wea. Pred.,
Salt Lake City UT,
Amer. Meteor. Soc.,
CDROM 3B.2.

H. Krutka,
2007:
"Analysis of Melt Blowing Dies Ising
Computational Fluid Dynamics."
Ph.D. Dissertation,
School of Chemical, Biological & Materials Engineering,
University of Oklahoma.

V. Limpasuvan, D. L. Wu, M. J. Alexander, M. Xue, M. Hu,
S. Pawson and J. R. Perkins,
2007:
"The ARPS stratospheric gravity wave simulation over
Greenland during 24 January 2005."
J. Geo. Res.,
112,
D10115.
DOI: 10.1029/2006JD007823.

H. Liu,
2007:
"Retrieval of Moisture from
GPS Slantpath Water Vapor Observations
Using 3DVAR
and Its Impact on the Prediction of
Convection Initiation and Precipitation."
Ph.D. dissertation
(advisor M. Xue),
School of Computer Science,
University of Oklahoma.

H. Liu and M. Xue,
2007:
"Prediction of convective initiation and storm evolution
on 12 June 2002 during IHOP.
Part I:
Control simulation and
sensitivity experiments."
Mon. Wea. Rev.,
136,
22612283.

H. Liu, M. Xue, R. J. Purser and D. F. Parrish,
2007:
"Retrieval of Moisture
from GPS Slantpath Water Vapor Observations
using 3DVAR
with Isotropic and Anisotropic Recursive Filters."
Mon. Wea. Rev.,
135,
15061521.

R. M. May, M. I. Biggerstaff and M. Xue,
2007:
"A Doppler radar emulator
and its application to
the detectablility of tornadic signatures.
J. Atmos. Ocean Tech.,
24,
19731996.

J. Rufinus,
2007:
"Magnetic properties of (Ti, V, Cr)doped GaN clusters."
J. Magnet. and Magnetic Mat. Vol.,
310
(2),
16661668.

J. Rufinus and Y. Kortsarts,
2007:
"Parallel Heat Distribution in One Dimension."
J. of Computing Sciences in Colleges,
22
(2),
7481.

J. M. Straka, E. N. Rasmussen, R. P. DaviesJones and
P. M. Markowski,
2007:
"An observational and numerical examination of
lowlevel counterrotating vortices in
the rear flank of supercells."
Electronic J. Severe Storms Meteor.,
2
(8),
122.

A. Striolo and S. A. Egorov,
2007:
"Sterical Stabilization of Colloidal Particles:
Implicit and Explicit Solvent."
Journal of Chemical Physics,
126,
014902.

R. M. Todd and J. R. Cruz,
2007:
"Computing MaximumLikelihood Bounds for
ReedSolomon Codes over Partial Response Channels."
Proceedings of the
IEEE International Conference on Communications 2007.
Selected as
Best Paper
of the
Signal Processing and Coding for Data Storage Symposium
of ICC 2007.

M. van den Broeke,
2007:
"Polarimetric Signatures and Microphysical Processes in
Tornadic Southern and High Plains Classic Supercells."
M.S. thesis,
School of Meteorology (advisor J. Straka),
University of Oklahoma.

H. Wang, W. Chang and J. R. Cruz,
2007:
"Performance of a ChaseType Decoding Algorithm for
ReedSolomon Codes on
Perpendicular Magnetic Recording Channels."
Digests 8th
Perpendicular Magnetic Recording Conference,
Tokyo Japan,
250251.

H. Xia and J. R. Cruz,
2007:
"Performance of ReliabilityBased Iterative
SoftDecision ReedSolomon Decoding on
Magnetic Recording Channels."
IEEE Transactions on Magnetics,
43
(7),
33203323.

H. Xia and J. R. Cruz,
2007:
"ReliabilityBased Forward Recursive Algorithms for
Algebraic SoftDecision Decoding of
ReedSolomon Codes."
IEEE Transactions on Communications,
55
(7),
12731278.

M. Xue, K. K. Droegemeier and D. Weber,
2007:
"Numerical prediction of highimpact local weather:
A driver for petascale computing."
In
Petascale Computing: Algorithms and Applications,
D. Bader, ed.,
Taylor & Francis.

M. Xue, Y. Jung and G. Zhang,
2007:
"Error modeling of simulated reflectivity observations
for ensemble Kalman filter data assimilation of
convective storms."
Geophys. Res. Letters,
34,
L10802.
DOI: 10.1029/2007GL029945.

M. Xue, F. Kong, D. Weber, K. W. Thomas, Y. Wang,
K. A. Brewster, K. Droegemeier, J. Kain, S. Weiss,
D. Bright, M. Wandishin, M. Coniglio and J. Du,
2007:
"CAPS Realtime Stormscale Ensemble and Highresolution
Forecasts as Part of the NOAA Hazardous Weather Testbed
2007 Spring Experiment."
Proceedings of the
22nd Conference on Weather Analysis and
Forecasting/18th Conference on Numerical Weather
Prediction,
American Meteorological Society,
CDROM 3B.1.
2006
2006 Publications Facilitated by OSCER Rounds/Help Sessions

D. Abraham,
2006:
"Design of Wireless Brain Machine Interface Antennas."
M.S. thesis
(advisor T. Ibrahim),
School of Electrical & Computer Engineering,
University of Oklahoma,
May 2006.

R. Abraham,
2006:
"Advancements in Ultra High Field MRI RF Technology:
Head and Whole Body Applications."
M.S. thesis
(advisor T. Ibrahim),
School of Electrical & Computer Engineering,
University of Oklahoma, May 2006.

Ben Baranowski,
2006:
"The Sensitivity of Numerically Simulated
Multicellular Convection to Grid Spacing and
Computational Mixing Coefficients."
M.S. thesis,
University of Oklahoma.

B. Baranowski, C. Doswell, D. Weber and A. Loftus,
2006:
"The Sensitivity of Numerically Simulated
Multicellular Convection to Grid Spacing and
Computational Mixing Coefficients."
Proc. 23rd AMS Severe Local Storms Conference,
St. Louis MO,
November 2006.

J. Bourassa, B. Roostaei, R. Côte,
H. A. Fertig and K. Mullen,
2006:
"Pseudospin
vortexantivortex states with
interwoven spin textures in
doublelayer quantum Hall systems."
Phys. Rev. B,
74,
195320.

A. O. Fierro, M. S. Gilmore, E. R. Mansell, L. J. Wicker
and J. M. Straka,
2006:
"Electrification and Lightning in an Idealized
Boundarycrossing Supercell Simulation of 2 June 1995."
Mon Wea. Rev.,
134,
31493172.

A. O. Fierro, L. M. Leslie, E. R. Mansell, Greg J. Holland
and J. M. Straka,
2006:
"Numerical simulations of the evolution of
tropical cyclone electrification, lightning, microphysics,
and dynamics at landfall: preliminary results."
Preprint,
86th AMS Annual Meeting,
Atlanta GA,
Jan. 283,
American Meteorological Society.

J. Gao, K. Brewster and M. Xue,
2006:
"Differences Between Explicit and Approximated Radar
Ray Paths Due to Vertical Gradient of Refractivity."
Proc. of Conf. Radar Meteor.,
Amer. Meteor. Soc.,
CDROM JP1J.14.

T. S. Ibrahim,
2006:
"7 Tesla WholeSlice and Localized Excitation
Everywhere in the Human Head."
Proceedings of The 14th
International Society of Magnetic Resonance in Medicine
Annual Meeting,
Seattle WA,
May 2006,
700.

T. S. Ibrahim,
2006:
"Ultrahigh Field MRI Wholeslice and Localized RF Field
Excitations Using the Same RF Transmit Array."
IEEE Transactions on Medical Imaging,
25
(10),
13411347.

T. S. Ibrahim,
2006:
"A Perspective into Ultra High Field MRI RF Coils."
Ultra High Field Magnetic Resonance Imaging
(Biological Magnetic Resonance
26),
Robitaille & Berliner, eds.,
Springer,
New York NY.

K. M. Kanak and J. M. Straka,
2006:
"An Idealized Numerical Simulation of
MammatusLike Clouds."
Atmos. Sci. Letters.,
7
(1),
28.
DOI: 10.1002/asl.121.

K. Kuhlman, E. R. Mansell, C. L. Ziegler, D. R. MacGorman and
J. M. Straka,
2006:
"Numerical Simulations of the 29 June STEPS Supercell:
Microphysics, Electrification, and Lightning."
Mon. Wea. Rev.,
134,
27342757.

A. Loftus, C. Doswell and D. Weber,
2006:
"Parameterized Mesoscale Forcing Mechanisms for
Initiating NumericallySimulated Isolated
Multicellular Convection."
Proc. 23rd AMS Severe Local Storms Conference,
St. Louis MO,
November 2006.

D. B. Mechem, S. S. Chen and R. A. Houze, Jr.,
2006:
"Momentum Transport Processes in the Stratiform Regions
of Mesoscale Convective
Systems over the Western Pacific Warm Pool."
Quart. J. Roy. Meteor. Soc.,
132,
709736.

D. B. Mechem, P. C. Robinson and Y. L. Kogan,
2006:
"Processing of Cloud Condensation Nuclei by
Collisioncoalescence in a Mesoscale Model."
J. Geophys. Res.,
111,
D18204.
DOI: 10.1029/2006JD007183.

A. Mercer and M. B. Richman,
2006:
"Statistical Differences of Quasigeostrophic Variables,
Stability, and Moisture Profiles in North American
Storm Tracks."
Mon. Wea. Rev.,
135,
23122338.

A. Mercer, C. Shafer, M. Richman, L. Leslie and C. Doswell,
2006:
"Analysis of Tornado Outbreaks Using Principal Components."
Proc. 23rd AMS Severe Local Storms Conference,
St. Louis MO,
November 2006.

H. Neeman, L. Lee, J. Mullen and G. Newman,
2006:
"Analogies for Teaching Parallel Computing
to Inexperienced Programmers."
inroads: SIGCSE Bulletin,
38
(4),
December 2006.

B. Qin and D. Zhang,
2006:
"Numerical Study of High Velocity NonDarcy Flow
Through Porous Media Using LBM Technique."
Proceedings of the Society of Petroleum Engineers
Annual Technical Conference and Exhibition,
San Antonio TX.

E. N. Rasmussen and J. M. Straka,
2006:
"Evolution of Angular Momentum in the
2 June 1995, Dimmitt, Texas Tornado."
J. Atmos. Sci.,
64,
13651378.

E. N. Rasmussen, J. M. Straka, M. S. Gilmore and
R. DaviesJones,
2006:
"A Survey of the Occurrence of Rearflank Descending
Reflectivity Cores in a Sample of Supercells."
Wea. and Forecasting.,
21,
923938.

D. M. Schultz, K. M. Kanak, J. M. Straka, R. J. Trapp,
B. A. Gordon, D. S., Zrnic , G. H. Bryan, A. J. Durant,
T. J. Garrett, P. M. Klein and D. K. Lilly,
2006:
"The Mysteries of Mammatus Clouds:
Observations and Formation Mechanisms."
J. Atmos. Sci.,
63,
24092435.

C. Shafer, A. Mercer, C. Doswell, L. Leslie and M. Richman,
2006:
"Analysis of Mesoscale Model Forecasts
to Distinguish Tornado Outbreaks from Primarily
Nontornadic Severe Weather Outbreaks."
Proc. 23rd AMS Severe Local Storms Conference,
St. Louis MO,
November 2006.

A. Schwettmann, J. Crawford, K. Richard Overstreet and
J. P. Shaffer,
2006:
"Cold
Cs Rydberggas Interactions."
Phys. Rev. A
74,
020701(R).

J. M. Straka and M. S. Gilmore,
2006:
"Does the influence of oblatelike distortions in
larger raindrops make a difference in
collection and evaporation parameterizations?"
J. Appl. Meteor.,
45,
15821591.

R. Voronov,
2006:
"Slip Boundary Flow on Nanoscale
Superhydrophobic Interfaces: A Molecular Dynamics Study 
Slip Length as a Function of Wetting Properties."
M.S. thesis,
School of Chemical, Biological & Materials Engineering,
University of Oklahoma.

R. Voronov, D. Papavassiliou and L. Lee,
2006:
"Boundary Slip and Wetting Properties of Interfaces:
Correlation of the Contact Angle with the Slip Length."
Journal of Chemical Physics,
124,
204701.

D. Weber and H. Neeman,
2006:
"Experiences in Optimizing a Numercial Weather Predicition
Model: An Exercise in Futility?"
Proc. of the 7th LCI International Conference on Clusters:
The HPC Revolution 2006.
Other 2006 Publications Facilitated by OU Research IT

K. Brewster,
2006:
"Merging AMSRE Hydrometeor Data with Coastal Radar Data
for Short Term Highresolution Forecasts of Hurricane Ivan."
Proc. 14th Conference on Satellite Meteorology and
Oceanography,
Atlanta GA, American Meteorological Society, Boston.
Conference CD, paper P5.7.

J.Y. Byon,
2006:
"Diurnal Variation of Tropical Convection During
TOGA COARE IOP."
Ph.D. dissertation,
Seoul National University.

P. Cheng, V. A. Magnotta, D. H. Wu, P. Nopoulos, et al.,
2006:
"Evaluation of
the GTRACT diffusion tensor tractography algorithm:
a validation and reliability study."
Neuroimage,
31
(3),
107585.

D. T. Dawson II and M. Xue,
2006:
"Numerical Forecasts of
the 1516 June 2002 Southern Plains Severe MCS:
Impact of Mesoscale Data and Cloud Analysis."
Mon. Wea. Rev.,
134,
16071629.

S. Dawson, C. Kao, Y. Wang and P. Williams,
2007:
"QCD Corrections to Higgs Pair Production
in Bottom Quark Fusion."
Phys. Rev. D,
75,
013007.
DOI: 10.1103/PhysRevD.75.013007.

Y. Dong, Y. Gu and D. S. Oliver,
2006:
"Sequential assimilation of 4D seismic data for
reservoir description using the ensemble Kalman filter."
Journal of Petroleum Science and Engineering,
53
(12),
8399,
2006.

J. Gao, K. Brewster and M. Xue,
2006:
"A Comparison of
the Radar Ray Path Equations and Approximations
for Use in Radar Data Assimilation."
Adv. Atmos. Sci.,
32,
190198.

J. Gao, M. Xue, S. Lee, A. Shapiro, Q. Xu and
K. K. Droegemeier,
2006:
"A Threedimensional Variational Method for
Velocity Retrievals from SingleDoppler Radar on
Supercell Storms."
Meteorol. And Atmos. Physics,
21,
457469.

G. Ge, J. Gao and K. K. Droegemeier,
2006:
"The Impact of Different Data Fields on
Stormscale Data Assimilation."
11th conf. on mesoscale processes
and
32nd Conference on Radar Meteorology,
CDROM JP1J.3.

Y. Gu and D. S. Oliver,
2006:
"The ensemble Kalman filter for continuous updating of
reservoir simulation models."
Journal of Engineering Resources Technology,
128
(1),
7987.

M. Hu, M. Xue and K. Brewster,
2006:
"3DVAR and Cloud Analysis with WSR88D LevelII Data
for the Prediction of the Fort Worth Tornadic Thunderstorms.
Part I: Cloud Analysis and its Impact."
Mon. Wea. Rev.,
134,
675698.

M. Hu, M. Xue, J. Gao and K. Brewster,
2006:
"3DVAR and Cloud Analysis with WSR88D LevelII Data
for the Prediction of the Fort Worth Tornadic Thunderstorms.
Part II: Impact of Radial Velocity Analysis via 3DVAR."
Mon. Wea. Rev.,
134,
699721.

Y. L. Kogan,
2006:
"Largeeddy Simulation of Air Parcels in
Stratocumulus Clouds: Time Scales and Spatial Variability."
J. Atmos. Sci.,
63,
952967.

F. Kong, K. K. Droegemeier and N. L. Hickmon,
2006:
"Multiresolution Ensemble Forecasts of an
Observed Tornadic Thunderstorm System.
Part I: Comparison of Coarse and Finegrid Experiments."
Mon. Wea. Rev.,
134,
807833.

P. M. Le and D. V. Papavassiliou,
2006:
"On Temperature Prediction at Low Re Turbulent Flows
Using the Churchill Turbulent Heat Flux
Correlation."
Int. J. Heat Mass Transf.,
49,
36813690.

P. M. Le and D. V. Papavassiliou,
2006:
"Turbulent Heat Transfer in Plane Couette Flow."
J. of Heat Transf., Trans. ASME.
128,
5362.

H. Liu and M. Xue,
2006:
"Retrieval of Moisture from
Slantpath Water Vapor Observations
of a Hypothetical GPS Network
Using a Threedimensional Cariational Scheme
with Anisotropic Background Error."
Mon. Wea. Rev.,
134,
933949.

Y. Lu, D. H. Wu and V. A. Magnotta,
2006:
"Partial Volume Correction of
Magnetic Resonance Spectroscopic Imaging."
Proc. Society for PhotoOptical Instrumentation Engineers
(SPIE) 2006,
6512,
322330.

V. A. Magnotta, L. Friedman and D. H. Wu,
2006:
"Measurement of SignaltoNoise and ContrasttoNoise
in the fBIRN MultiCenter Imaging Study."
Journal of Digital Imaging,
19
(2),
140147.

W. J. Martin and M. Xue,
2006:
"Initial Condition Sensitivity Analysis of
a Mesoscale Forecast Using Verylarge Ensembles."
Mon. Wea. Rev.,
134,
192207.

N. A. Mayr, W. T. Yuh, T. Taoka, J. Z. Wang, D. H. Wu,
J. F. Montebello, et al.,
2006:
"Serial therapyinduced changes in tumor shape
in cervical cancer
and their impact on assessing tumor volume
and treatment response."
Am. J. Roentgenol,
187
(1),
6572.

M. Paprzycki, I. Lirkov and S. Margenov,
2006:
"Benchmarking Performance of an MPIbased Solver
for 3D Elasticity Problems."
Proceedings of the IEEE J. V. Atanasoff Conference,
IEEE CS Press,
Los Alamitos CA,
260265.

S. Sampson, K. Brewster, G. Jedlovec and W. Lapenta,
2006:
"Use of AIRS/AMSU Retrieved Soundings
to Improve Prediction of Gulf Moisture Return."
Proc. 14th Conference on Satellite Meteorology and
Oceanography,
Atlanta GA, American Meteorological Society, Boston.
Conference CD, paper P5.4.

J. Snow, D. Wicke, M. Diesburg, G. Garzoglio and G. Davies,
2006:
"D0 Data Reprocessing With SAMGrid."
Proc. International Conference on Computing in
High Energy and Nuclear Physics,
Mumbai, India.

A. Striolo,
2006:
"Adsorption of Model SurfactantLike Copolymers on
NanoPatterned Surfaces."
Journal of Chemical Physics,
125,
094709.
Also featured in
Virtual Journal of Nanoscale Science & Technology,
14
(12),
Sep 18 2006.
Also featured in
Virtual Journal of Biological Physics Research,
12
(6),
Sep 15 2006.

A. Striolo,
2006:
"Colloidal Brushes in Complex Solutions:
Existence of a Weak MidRange Attraction
Due to ExcludedVolume Effects."
Physical Review E,
64,
041401.
Also featured in
Virtual Journal of Nanoscale Science & Technology,
14
(18),
Oct 30 2006.

A. G. Striz, B. Kennedy, Z. Siddique and H. Neeman,
2006:
"A Roadmap for Moderate Fidelity
Conceptual Design with Multilevel Analysis and MDO."
Proc. 47th AIAA/ASME/ASCE/AHS/ASC
Structures, Structural Dynamics, and Materials
Conference,
Newport RI,
AIAA 20061619.

R. M. Todd and J. R. Cruz,
2006:
"Performance and Maximumlikelihood Bounds for
ReedSolomon Codes on Partialresponse Channels.",
Proc. Digests IEEE Internat. Magn. Conf.,
295.

R. M. Todd and J. R. Cruz,
2006:
"Performance of Adaptive Belief Propagation Decoding
and Maximumlikelihood Bounds for ReedSolomon Codes on
Partialresponse Channels.",
IEEE Trans. Magn.,
42
(10),
25552557.

M. Tong,
2006:
"Ensemble Kalman Filter Assimilation
of Doppler Radar Data
for the Initialization and Prediction
of Convective Storms."
Ph.D. dissertation
(advisor M. Xue),
School of Meteorology,
University of Oklahoma,
May 2006.

J. Wang, N. Mayr, W. Yuh, H. Zhang, J. Montebello,
J. Grecula, D. H. Wu and S. Edwards,
2006:
"THEValB03:
Tumor Volume Regression During Radiation Therapy
to Predict Treatment Outcome for Cervical Cancer."
Med. Phys,
33,
2289.

J. Z. Wang, N. A. Mayr, W. T. C. Yuh, J. Montebello,
H. Zhang, N. Gupta, J. Grecula and D. H. Wu,
2006:
"Kinetic Model of Tumor Regression during Radiation Therapy
of Cervical Cancer Patients."
International Journal of
Radiation Oncology, Biology, Physics,
66
(3),
S603.

D. H. Wu, Y. Gao, C. C. Lu and J. Suri,
2006:
"Improvement to functional Magnetic Resonance Imaging (fMRI)
Methods using Nonrigid Body Image Registration Methods
for Correction in the Presence of
Susceptibility Artifact Effects."
Proc. IEEE Engineering in Medicine & Biology Society
(EMBS) 2006,
(1),
10181020.

D. H. Wu, J. Suri, V. Magnotta, T. Przebinda and V. Debrunner,
2006:
"Improved Method for Correction of Systematic Bias
Introduced by the Subvoxel Image Registration Process
in Functional Magnetic Resonance Imaging (fMRI)."
Proceedings SPIE Medical Imaging 2006.

Q. Xu, S. Liu and M. Xue,
2006:
"Background Error Covariance Functions
for Vector Wind Analyses Using Doppler
Radar Radialvelocity Observations."
Quart. J. Roy. Meteor. Soc.,
132,
28872904.

M. Xue, M. Tong and K. K. Droegemeier,
2006:
"An OSSE Framework Based on
the Ensemble Squareroot Kalman Filter
for Evaluating Impact of Data
from Radar Networks on Thunderstorm Analysis and Forecast."
J. Atmos. Ocean Tech.,
23,
4666.

M. Xue and W. Martin,
2006:
"A Highresolution Modeling Study of
the 24 May 2002 Case During IHOP.
Part I: Numerical Simulation and General Evolution of
the Dryline and Convection."
Mon. Wea. Rev.,
134,
149171.

M. Xue and W. Martin,
2006:
"A Highresolution Modeling Study of
the 24 May 2002 Case During IHOP.
Part II: Horizontal Convective Rolls and
Convective Initiation.
Mon. Wea. Rev.,
134,
172191.
2005
2005 Publications Facilitated by OSCER Rounds/Help Sessions

M. A. Askelson and J. M. Straka,
2005:
"An extension of the general response function
to multiple dimensions:
Part I:
Framework for Interpreting the Response Function."
Monthly Weather Review,
133,
21172131.

M. A. Askelson, P. M. Pauley and J. M. Straka,
2005:
"Response functions for arbitrary weight functions
and data distributions.
Part II:
Response Function Derivation and Verification."
Mon. Wea. Rev.,
133,
21322147.

C. Byun, G. P. Guruswamy, A. L. Huizenga, H. J. Neeman
and A. G. Striz,
2005:
"High Fidelity Dynamic Analysis of Launch Vehicles
on SingleImage Supercomputers."
Proc. of the
46th AIAA/ASME/ASCE/AHS/ASC Structures, Structural
Dynamics and Materials Conference.

Z. Cui, B. Vieux, H. Neeman and F. Moreda,
2005:
"Parallelization of a Distributed Hydrologic Model."
Int. J. of Computer Applications in Technology,
Special Issue on Applications for High Performance Systems,
22
(1),
4252.

Z.N. Huang,
2005:
"Design of New Molecular Dynamics Global Minimum Search
Protocols for Mapping Energy Landscapes and
Folding Conformations of Polypeptides and Miniproteins."
Ph.D. dissertation,
Department of Chemistry & Biochemistry,
University of Oklahoma.

T. S. Ibrahim,
2005:
"Homogeneous Distributions of RF Fields over
the Human Head Volume at 7 Tesla."
Proceedings of The 13th
International Society of Magnetic Resonance in Medicine
Annual Meeting,
Miami FL,
May 2005,
2752.

T. S. Ibrahim,
2005:
"RF Selective Excitation for Localized Imaging
at 9.4 Tesla."
Proceedings of The 13th International Society of
Magnetic Resonance in Medicine Annual Meeting,
Miami FL,
May 2005,
890.

T. S. Ibrahim,
2005:
"Homogeneous Volume Head Coils for Ultra High
Field MRI."
Proceedings of The USNC/CNC/URSI North American
Radio Science Meeting,
Washington DC,
July 2005,
37.5.

J. Lavaja and M. Bagajewicz,
2005:
"On A New Milp Model For The Planning Of Heat Exchanger
Network Cleaning Part II: Throughput Loss Considerations."
submitted.

J. Lavaja and M. Bagajewicz,
2005:
"On A New Milp Model For The Planning Of Heat Exchanger
Network Cleaning Part III: Multiperiod Cleaning Under
Uncertainty With Financial Risk Management."
submitted.

N. Liu and D. S. Oliver,
2005:
"Critical evaluation of the ensemble Kalman filter on
history matching of geologic facies."
SPE Reservoir Eng. & Eval.,
8
(6),
470477.

Adrian Loftus,
2005:
"Parameterized Mesoscale Forcing Mechanisms for
Initiating NumericallySimulated Isolated
Multicellular Convection."
M.S. thesis,
University of Oklahoma.

P. Mukherjee and Y. Wang,
2005:
"Primordial Power spectrum reconstruction."
JCAP,
12,
007.
DOI: 10.1088/14757516/2005/12/007.

J. Gao, C. Nuttall, C. Gilreath, M. Xue,
K. Brewster and K. Droegemeier,
2005:
"Multiple Doppler Wind Analysis and Assimilation
via 3DVAR using Simulated Observations of
the Planned CASA Network and WSR88D Radars."
Proc. 32nd Conf. Radar Meteorology,
Albuquerque NM.

V. Ranganath,
2005:
"FDTD Analysis of RF Coils for EPRI and MRI Applications."
M.S. thesis,
School of Electrical & Computer Engineering,
University of Oklahoma, December 2005.

J. M. Straka, M. S. Gilmore, K. M. Kanak and E. N. Rasmussen,
2005:
"A Comparison of the Conservation of Number Concentration
for the Continuous Collection and Vapor Diffusional Growth
Equations Using One and Two Moments."
J. Appl. Meteor.,
44,
18841889.

L. White and A. Shapiro,
2005:
"Optimization of Wind Field Retrieval Procedures."
Applied Mathematics and Computation,
171,
2552.

D. S. Wilson and L. L. Lee,
2005:
"Molecular Recognition and Adsorption Equilibria
in Starburst Dendrimers:
Gas Structure and Sensing via Molecular Theory."
Fluid Phase Equilibria,
228229,
197205.
Other 2005 Publications Facilitated by OU Research IT

E. J. Adlerman and K. K. Droegemeier,
2005:
"The dependence of numerically simulated
cyclic mesocyclogenesis upon
environmental vertical wind shear."
Mon. Wea. Rev.,
133,
35953623.

K. Brewster, M. Hu, M. Xue and J. Gao,
2005:
"Efficient assimilation of radar data
at high resolution
for shortrange numerical weather prediction."
WWRP International Symposium on Nowcasting and
Very Short range Forecasting,
CDROM 3.06.

H. Dong and R. A. Wheeler,
2005:
"Ultrafast Vibrational Energy Transfer from OH
Stretching Vibrations of Liquid Water."
Chem. Phys. Lett.,
413,
176181.

K. K. Droegemeier, K. Brewster, M. Xue, D. Weber,
D. Gannon, B. Plale, D. Reed, L. Ramakrishnan,
J. Alameda, R. Wilhelmson, T. Baltzer, B. Domenico,
D. Murray, M. Ramamurthy, A. Wilson, R. Clark,
S. Yalda, S. Graves, R. Ramachandra, J. Rushing,
E. Joseph and V. Morris,
2005:
"Serviceoriented Environments for
Dynamically Interacting with Mesoscale Weather."
Computing in Science and Engineering,
7,
1227.

M. Hu,
2005:
"3DVAR and cloud analysis with WSR88D levelII data
for the prediction of tornadic thunderstorms."
Ph.D. dissertation
(advisor M. Xue),
School of Computer Science,
University of Oklahoma.

M. Hu and M. Xue,
2005:
"Impact of Configurations
of Rapid Intermittent Assimilation
of WSR88D Radar Data
for the 8 May 2003 Oklahoma City
Tornadic Thunderstorm Case."
extended abstract,
Proc. of 17th Conf. Num. Wea. Pred.,
Amer. Metero. Soc.,
13.2.

P. M. Le and D. V. Papavassiliou,
2005:
"Turbulent Dispersion from Elevated Line Sources
in Plane Channel and Plane Couette Flow."
AIChE J.,
51
(9),
24022414.

E. R. Mansell, D. R. MacGorman, C. L. Ziegler and
J. M. Straka,
2005:
"Charge Structure and Lightning Sensitivity
in a Simulated Multicell Thunderstorm."
J. Geophys. Res.,
110,
D12101.
DOI: 10.1029/2004JD005287.

D. Petcu, D. Vizman and M. Paprzycki,
2005:
"Porting CFD Codes towards Grids. A Case Study."
Parallel Processing and Applied Mathematics
6th International Conference, PPAM 2005,
Poznan, Poland,
September 1114,
2005.
Also in
Revised Selected Papers
Series: Lecture Notes in Computer Science,
Vol. 3911,
Sublibrary: Theoretical Computer Science
and General Issues,
R. Wyrzykowski, J. Dongarra, N. Meyer and
J. Wasniewski, eds.,
2006, ISBN: 3540341412.

A. Rahaman and R. A. Wheeler,
2005:
"Wavelet Transforms for Determining
TimeDependent Vibrational Frequencies."
J. Chem. Theory Comput.,
1,
769771.
(One of the top 20 most accessed articles for
4th
quarter 2005 and
3rd
quarter 2005.)

A. Silveira,
"Vortex Formation in Horizontally Elliptical Thermal Bubbles
in an Ambient Vertical Shear."
M.S. thesis
(advisors J. Straka and K. Kanak),
School of Meteorology,
University of Oklahoma.

J. L. Smedsmo, E. FoufoulaGeorgiou, V. Vuruputur, F. Kong
and K. Droegemeier,
2005:
"On the vertical structure of modeled and observed
deep convective storms:
Insights for precipitation retrieval and microphysical
parameterization."
J. Appl. Meteor.,
44,
18661884.

J. M. Straka and E. R. Mansell,
2005:
"A Bulk Microphysics Parameterization
with Multiple Ice Precipitating Categories."
J. Appl. Meteor.,
44,
445466.

M. Tong and M. Xue,
2005:
"Ensemble Kalman Filter Assimilation of Doppler
Radar Data with a Compressible Nonhydrostatic Model:
OSSE Experiments."
Mon. Wea. Rev.,
133,
17891807.

M. Tong and M. Xue,
2005:
"Simultaneous Retrieval of Microphysical Parameters
and Atmospheric State Variables
with Radar Data and Ensemble Kalman Filter Method."
Extended abstract,
17th Conf. Num. Wea. Pred., Amer. Meteor. Soc.,
Washington DC,
P1.30.

D. S. Wilson and L. L. Lee,
2005:
"Chemical Potentials and Phase Equilibria of LennardJones
Mixtures: A SelfConsistent Integral Equation Approach."
Journal of Chemical Physics,
123,
044512:110.

D. H. Wu, N. A. Mayr, Y. Karatas, R. Karatas, M. Adli,
S. M. Edwards, J. D. Wolff, Movahed A, J. F. Montebello
and W. T. C. Yuh,
2005:
"Interobserver variation in
cervical cancer tumor delineation for
imagebased radiotherapy planning
among and within different specialties."
Journal of Applied Clinical Medical Physics,
6
(4),
106110.

D. H. Wu, N. A. Mayr, Y. Zheng, et al.,
2005:
"Regional cervical tumor microcirculatory response:
Are there systematic differences in contrast uptake patterns
with respect to the uterus?"
Journal of Xray Science,
13
(2),
7378.

Q. Xu, K. Nai and L. Wei,
2005:
"An Innovation Method for Estimating
Radar Radialvelocity Observation Error
and Background Wind Error Covariances."
Quart. J. Roy. Meteor. Soc.,
133,
407415.
2004
2004 Publications Facilitated by OSCER Rounds/Help Sessions

A. Aseeri and M. Bagajewicz,
2004:
"New Measures and Procedures to Manage Financial Risk
with Applications to the Planning of Gas Commercialization
in Asia."
Computers and Chemical Engineering,
28
(12),
27912821.

M. S. Gilmore, J. M. Straka and E. N. Rasmussen,
2004:
"Precipitation uncertainty due to variations
in precipitation particle parameters within
a simple microphysics scheme."
Mon. Wea. Rev.,
132,
26102627.

M. Gilmore, J. M. Straka and E. N. Rasmussen,
2004:
"Precipitation evolution in simulated deep convective clouds
between liquidonly and simple ice and
liquid phase microphysics."
Mon. Wea. Rev.,
132,
18971916,
plus supplement.

Y. Gu and D. S. Oliver,
2004:
"History Matching of the PUNQS3 Reservoir Model
Using the Ensemble Kalman Filter."
Proc. of the Society of Petroleum Engineers
Annual Technical Conference and Exhibition 2004
(SPE 89942),
Houston TX,
September 2529.

C. A. Hixson, J. Chen, Z.N. Huang and R. A. Wheeler,
2004:
"New perspectives on multiplecopy meanfield
molecular dynamics methods."
J. Molec. Graphics Modeling,
22,
349357
(invited review).

C. A. Hixson and R. A. Wheeler,
2004:
"Practical multiplecopy methods for
sampling classical statistical mechanical ensembles."
Chem. Phys. Lett.,
386,
330335.

H.W. Lao, H. J. Neeman and D. V. Papavassiliou,
2004:
"A Pore Network Model for the Calculation of NonDarcy Flow
Coefficients in Fluid Flow Through Porous Media."
Chemical Engineering Communications,
191
(10),
12851322.

J. Lavaja and M. Bagajewicz,
2004:
"A New MILP Model for the Planning of
Heat Exchanger Network Cleaning."
Industrial and Engineering Chemistry Research,
43
(14),
3924  3938.

S. Marru,
2004:
"A Gridenabled Scientific Workbench for
Integrated Predictive Earth System Simulation."
M.S. thesis,
School of Electrical & Computer Engineering,
University of Oklahoma.

S. Subramaniyam, H. J. Neeman and A. G. Striz,
2004:
"Domain Decomposition in Displacement
Based MultiLevel Structural
Optimization."
10th AIAA/ISSMO Multidisciplinary Analysis and
Optimization Conference.

N. Thummala,
2004:
"Convective heat transfer in microfluidics using
Lagrangian methods and lattice Boltzmann simulations."
M.S. thesis,
School of Chemical, Biological & Materials Engineering,
University of Oklahoma.

R. M. Todd and J. R. Cruz,
2004:
"Enforcing MaximumTransitionRun Code Constraints
and LowDensity ParityCheck Decoding."
IEEE Trans. Magnetics,
40,
3566  3571.
Other 2004 Publications Facilitated by OU Research IT

D. T. Dawson II and M. Xue,
2004:
"Impact of Mesoscale Data, Cloud Analysis on
the Explicit Prediction of a MCS During IHOP 2002."
Extended Abstract,
20th Conf. Wea. Analy. Forecasting/16th
Conf. Num. Wea. Pred., Amer. Meteor. Soc.,
Seattle, WA.

G. Garzoglio, I. Terekhov, J. Snow, S. Jain and A. Nishandar,
2004:
"Experience producing simulated events for the
DZero experiment on the SAMGrid."
Proc. International Conference on Computing in
High Energy and Nuclear Physics,
Interlaken, Switzerland.

M. Hu, M. Xue, J. Gao and K. Brewster,
2004:
"Prediction of Fort Worth tornadic thunderstorms
using 3DVAR and cloud analysis with WSR88D LevelII data."
11th Conf. Aviation, Range, Aerospace and
22nd Conf. Severe Local Storms,
Amer. Meteor. Soc.,
CDROM
J1.2.

F. Kong, K. Droegemeier, V. Venugopal and
E. FoufoulaGeorgiou,
2004:
"Application of Scalerecursive Estimation to
Ensemble Forecasts:
A Comparison of Coarse and Fine Resolution Simulations
of a Deep Convective Storm."
Preprints,
20th Conf. on Wea. Analysis and Forecasting and
16th Conference on Num. Wea. Prediction,
Seattle, WA,
Amer. Meteor. Soc.

N. Levit, K. K. Droegemeier and F. Kong,
2004:
"High Resolution Stormscale Ensemble Forecasts of
the 28 March 2000 Fort Worth Tornadic Storms."
Preprints,
20th Conf. on Wea. Analysis and Forecasting
and 16th Conference on Num. Wea. Prediction,
Amer. Meteor. Soc.,
Seattle WA.

M. Mambelli, R. Gardner, Y. Smirnov, X. Zhao,
G. Gieraltowski, E. May, A. Vaniachine, R. Baker,
W. Deng, P. Nevski, H. Severini, K. De, P. McGuigan,
N. Ozturk, M. Sosebee,
2004:
"ATLAS Data Challenge Production on Grid3."
SC04.

P. Nutter, D. Stensrud and M. Xue,
2004:
"Effects of coarselyresolved and temporallyinterpolated
lateral boundary conditions
on the dispersion of limittedarea ensemble forecasts."
Mon. Wea. Rev.,
132,
23582377.

P. Nutter, M. Xue and D. Stensrud,
2004:
"Application of Lateral Boundary Condition Perturbations
to Help Restore Dispersion in
LimitedArea Ensemble Forecasts."
Mon. Wea. Rev.,
132,
23782390.

P. Nutter, M. Xue and D. Stensrud,
2004:
"On the Need for Perturbed LBCs in
Limitedarea Ensemble Forecasts."
Extended Abstract,
20th Conf. Wea. Analy. Forecasting/16th
Conf. Num. Wea. Pred.,
Amer. Meteor. Soc.,
Seattle WA.

G. Pellicane, C. Caccamo, D. S. Wilson and L. L. Lee,
2004:
"Replica OrnsteinZernike Selfconsistent Theory
for Mixtures in Random Pores."
Phys. Rev. E,
69,
061202.

A. Rahaman and R. A. Wheeler,
2004:
"Potential Energy Landscape for Conformationally Gated,
Secondary Ubiquinone Binding in the Photosynthetic
Reaction Center of Rhodobacter Sphaeroides."
ChemPhysChem,
5,
249252.

D. Ren,
2004:
"4DVAR Retrieval of Prognostic Land Surface Model Variables."
Ph.D. dissertation
(advisor M. Xue),
School of Meteorology,
University of Oklahoma.

P. Sinha, S. Boesch, C. Gu, R. A. Wheeler and A. K. Wilson,
2004:
"Harmonic Vibrational Frequencies: Scaling Factors
for HF, B3LYP, and MP2 Methods in Combination with
CorrelationConsistent Basis Sets."
J. Phys. Chem. A,
108,
92139217.

R. A. Wheeler,
2004:
"Simulating Thermochemistry of pBenzoquinone Reduction
in Water and Ubiquinone Binding in the Photosynthetic
Reaction Center."
In
Molecular Bioenergetics: Simulations of
Electron, Proton, and Energy Transfer,
R. A. Wheeler, ed.
ACS Symposium Series:
Washington DC,
2004,
5169.
2003
2003 Publications Facilitated by OSCER Rounds/Help Sessions

B. A. Houshmand, H. J. Neeman and A. G. Striz,
2003:
"Displacement Based
Multilevel Structural
Optimization and High Performance Computing."
Proceedings of World Congress of Structural
and Multidisciplinary Optimization 5.

P. Mukherjee and Y. Wang,
2003:
"Wavelets and Wilkinson Microwave Anisotropy
Probe nonGaussianity."
ApJ,
613,
51.

P. Mukherjee and Y. Wang,
2003:
"Model independent reconstruction of
the primordial power spectrum from WMAP data."
ApJ,
599,
1.

P. Mukherjee and Y. Wang,
2003:
"Direct wavelet expansion of
the primordial power spectrum."
ApJ,
598,
779.

P. Mukherjee and Y. Wang,
2003:
"Wavelet band powers of the primordial power spectrum."
ApJ,
593,
38.
Other 2003 Publications Facilitated by OU Research IT

P. Nutter,
2003:
"Effects of Nesting Frequency and
Lateral Boundary Perturbations on
the Dispersion of Limitedarea Ensemble Forecasts."
Ph.D. dissertation
(advisor M. Xue),
School of Computer Science,
University of Oklahoma.

R. A. Wheeler, H. Dong and S. E. Boesch,
2003:
"Quasiharmonic Vibrations of Water, Water Dimer, and
Liquid Water from Principal Component Analysis of
Quantum or QM/MM Trajectories."
ChemPhysChem,
4,
382384.
(Featured in
Chemical & Engineering News,
Feb 9 2004,
3031.)

R. A. Wheeler and H. Dong,
2003:
"Optimal Spectrum Estimation in Statistical Mechanics."
ChemPhysChem,
4,
12271230.
(Featured in
Chemical & Engineering News,
Feb 9 2004,
3031.)

S. York, S. E. Boesch, R. A. Wheeler and R. Frech,
2003:
"Vibrational Assignments of High Molecular Weight Linear
Polyethylenimine (LPEI) Based on Monomeric and
Tetrameric Model Compounds."
Macromolecules,
36,
73487351.
2002
2002 Publications Facilitated by OSCER Rounds/Help Sessions

H.W. Lao,
2002:
"Stochastic estimation of porous media properties."
M.S. thesis,
School of Chemical, Biological & Materials Engineering,
University of Oklahoma.

H. Neeman, J. Mullen, L. Lee and G. Newman,
2002:
"Supercomputing in Plain English:
Teaching High Performance Computing to
Inexperienced Programmers."
Proceedings of the 3^{rd}
LCI International Conference on Linux Clusters:
The HPC Revolution 2002.

V. Ramasubramanian,
2002:
"Simulation of flow through porous media using
finite difference methods."
M.S. thesis,
School of Chemical, Biological & Materials Engineering,
University of Oklahoma.

R. M. Todd,
2002:
"Design of LowDensity ParityCheck Codes for Magnetic
Recording Channels."
Ph.D. dissertation,
School of Electrical & Computer Engineering,
University of Oklahoma.

L. White and J. Castagna,
2002:
"Stochastic Inversion of Fluid Modulus."
Geophysics,
67
(6),
18351843.

L. White and Y. Luo,
2002:
"Estimation of Carbon Transfer Coefficients
Using Duke Forrest Free Air CO2 Enrichment Data."
Applied Mathematics and Computation,
130,
101120.

L. White, B. Vieux and D. Armand,
2002:
"Surface Flow Model: Stochastic Inversion and Prediction."
Advances in Water Resources,
25,
317324.

L. White and M. Zaman,
2002:
"Stochastic inversion and prediction
applied to concrete overlay systems."
Applied Mathematics and Computation,
128,
5979.
2001
2001 Publications Facilitated by OSCER Rounds/Help Sessions

C. A. Hixson and R. A. Wheeler,
2001:
"Rigorous classicalmechanical derivation of
a multiple copy algorithm for sampling
statistical mechanical ensembles."
Phys. Rev. E,
64,
026701/026701026701/026706.

H.W. Lao, H. Neeman and D. Papavassiliou,
2001:
"Stochastic Prediction of Porous Medium Properties."
Proceedings of the 3rd International Conference on
Computational Technologies for Fluid/Thermal/Chemical
Systems with Industrial Applications.

H. Neeman, H.W. Lao, D. Simpson and D. Papavassiliou,
2001:
"Multiscale Characterization of Porous Media Properties
for Hydrocarbon Reservoir Simulation."
Proceedings of the SPIE Conference on
Commercial Applications for HighPerformance Computing.
